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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGAACCAGCTGCGAAGATTTTAGAGCTGTCTATTCTTCACTTGGCCATGTCCGAAATGGAAGTGCTAGAAACGAGACACCAAATCGTCATTAATGAGgtacatcttaagtttatgtgatgagaagagaaattgatgttaacccaaaccgagcaatgaccggtgtataaattaagctaaccaaacattacttaacctg...

Basic information

species Glycine max
transcript GLYMA20G02940.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192314699|gb|FK006625.1|FK006625
EST:     TGTCCGAAATGGAAGTGCTAGAAACGAGACACCAAATCGTCATTAATGAG                         GCGGTAGATCTTGCTAAACGGTTTTGTGATGGAGCAGCCCCTCGCATCATT
genomic: TGTCCGAAATGGAAGTGCTAGAAACGAGACACCAAATCGTCATTAATGAGgtacatctta ... tgttttgaagGCGGTAGATCTTGCTAAACGGTTTTGTGATGGAGCAGCCCCTCGCATCATT
EST: gi|58019927|gb|CX706669.1|CX706669
EST:     TGTCCGAAATGGAAGTGCTAGAAACGAGACACCAAATCGTCATTAATGAG                         GCGGTAGATCTTGCTAAACGGTTTTGTGATGGAGCAGCCCCTCGCATCATT
genomic: TGTCCGAAATGGAAGTGCTAGAAACGAGACACCAAATCGTCATTAATGAGgtacatctta ... tgttttgaagGCGGTAGATCTTGCTAAACGGTTTTGTGATGGAGCAGCCCCTCGCATCATT
EST: gi|192314700|gb|FK006626.1|FK006626
EST:     TGTCCGAAATGGAAGTGCTAGAAACGAGACACCAAATCGTCATTAATGAG                         GCGGTAGATCTTGCTAAACGGTTTTGTGATGGAGCAGCCCCTCGCATCATT
genomic: TGTCCGAAATGGAAGTGCTAGAAACGAGACACCAAATCGTCATTAATGAGgtacatctta ... tgttttgaagGCGGTAGATCTTGCTAAACGGTTTTGTGATGGAGCAGCCCCTCGCATCATT
EST: gi|193394871|gb|FK359044.1|FK359044
EST:     CACCAAATCGTCATTAATGAG                         GCGGTAGATCTTACTAAACGGTTTTGTGATGGAGCAGCCCCTCGCATCATT
genomic: CACCAAATCGTCATTAATGAGgtacatctta ... tgttttgaagGCGGTAGATCTTGCTAAACGGTTTTGTGATGGAGCAGCCCCTCGCATCATT
EST: gi|51336196|gb|CO980062.1|CO980062
EST:     TGTCCGAAATGGAAGTGCTAGAAACGAGACACCAAATCGTCATTAATGAG                         GCGGTAGATCTTGCTAAACGGTTTTGTGATGGAGCAGCCCCTCGCATCATT
genomic: TGTCCGAAATGGAAGTGCTAGAAACGAGACACCAAATCGTCATTAATGAGgtacatctta ... tgttttgaagGCGGTAGATCTTGCTAAACGGTTTTGTGATGGAGCAGCCCCTCGCATCATT
EST: gi|57574769|gb|CX547744.1|CX547744
EST:     TGTCCGAAATGGAAGTGCTAGAAACGAGACACCAAATCGTCATTAATGAG                         GCGGTAGATCTTGCTAAACGGTTTTGTGATGGAGCAGCCCCTCGCATCATT
genomic: TGTCCGAAATGGAAGTGCTAGAAACGAGACACCAAATCGTCATTAATGAGgtacatctta ... tgttttgaagGCGGTAGATCTTGCTAAACGGTTTTGTGATGGAGCAGCCCCTCGCATCATT
EST: gi|192316707|gb|FK006410.1|FK006410
EST:     TGTCCGAAATGGAAGTGCTAGAAACGAGACACCAAATCGTCATTAATGAG                         GCGGTAGATCTTGCTAAACGGTTTTGTGATGGAGCAGCCCCTCGCATCATT
genomic: TGTCCGAAATGGAAGTGCTAGAAACGAGACACCAAATCGTCATTAATGAGgtacatctta ... tgttttgaagGCGGTAGATCTTGCTAAACGGTTTTGTGATGGAGCAGCCCCTCGCATCATT
EST: gi|9899175|gb|BE608202.1|BE608202
EST:     TCCGAANATG-AAGTGCTAGAAACGAGACACCAAATCGTCATTAATGGAG                         -CGGTAGATCTTGGCTAACCGGTTT-GTGATGGAGCAGCCCCTCGCATCA
genomic: TCCGAA-ATGGAAGTGCTAGAAACGAGACACCAAATCGTCATTAATG-AGgtacatctta ... tgttttgaagGCGGTAGATCTTG-CTAAACGGTTTTGTGATGGAGCAGCCCCTCGCATCA
EST: gi|26058037|gb|CA800951.1|CA800951
EST:     TGTCCGAAATGGAAGTGCTAGAAACGAGACACCAAATCGTCATTAATGAG                         GCGGTAGATCTTGCTAAACGGTTTTGTGATGGAGCAGCCCCTCGCATCATT
genomic: TGTCCGAAATGGAAGTGCTAGAAACGAGACACCAAATCGTCATTAATGAGgtacatctta ... tgttttgaagGCGGTAGATCTTGCTAAACGGTTTTGTGATGGAGCAGCCCCTCGCATCATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATGAACCAGCTGCGAAGATTTTAGAGCTGTCTATTCTTCACTTGGCCATGTCCGAAATGGAAGTGCTAGAAACGAGACACCAAATCGTCATTAATGAGgtacatcttaagtttatgtgatgagaagagaaattgatgttaacccaaaccgagcaatgaccggtgtataaattaagctaaccaaacattacttaacctg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagagaaa