Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacggttcggctttggtgtgaattgtgttacatacttgaggcttgtgttgctagtttgttagtttttgttagtgggagggatttgaactcatgacctctccttctctcttctccttttaaccaccaagccaaaccttataactcctttgtgttgaatttgatgtgtttgtttcagAAGCCGGATATAAATTTAATGAGGAAAAGTTGTTGGAGTATAATCATATGAGTTTCGGAGGGCCGCCTGTTACTGTTGGATCGGACGAAGAAGCAAATGA

Basic information

species Glycine max
transcript GLYMA20G02940.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298164712|gb|HO014357.1|HO014357
EST:     GGGAATGGACCCGGTTCGGCTCTTTGAGAAACGGATGAATGCGCGGCGAG                         AAGCCGGATATAAATTTAATGAGGAAAAGTTGTTGGAGTATAATCATATGA
genomic: GGGAATGGACCCGGTTCGGCTCTTTGAGAAACGGATGAATGCGCGGCGAGgtaacggttc ... tttgtttcagAAGCCGGATATAAATTTAATGAGGAAAAGTTGTTGGAGTATAATCATATGA
EST: gi|213606310|gb|DB961370.1|DB961370
EST:     GGGAATGGACCCGGTTCGGCTCTTTGAGAAACGGATGAATGCGCGGCGAG                         AAGCCGGATATAAATTTAATGAGGAAAAGTTGTTGGAGTATAATCATATGA
genomic: GGGAATGGACCCGGTTCGGCTCTTTGAGAAACGGATGAATGCGCGGCGAGgtaacggttc ... tttgtttcagAAGCCGGATATAAATTTAATGAGGAAAAGTTGTTGGAGTATAATCATATGA
EST: gi|9898905|gb|BE607873.1|BE607873
EST:     GGGAATGGACCCGGTTCGGCTCTTTGAGAAACGGATGAATGCGCGGCGAG                         AAGCCGGATATAAATTTAATGAGGAAAAGTTGTTGGAGTATAATCATATGA
genomic: GGGAATGGACCCGGTTCGGCTCTTTGAGAAACGGATGAATGCGCGGCGAGgtaacggttc ... tttgtttcagAAGCCGGATATAAATTTAATGAGGAAAAGTTGTTGGAGTATAATCATATGA
EST: gi|58019927|gb|CX706669.1|CX706669
EST:     GAGAAACGGATGAATGCGCGGCGAG                         AAGCCGGATATAAATTTAATGAGGAAAAGTTGTTGGAGTATAATCATATGA
genomic: GAGAAACGGATGAATGCGCGGCGAGgtaacggttc ... tttgtttcagAAGCCGGATATAAATTTAATGAGGAAAAGTTGTTGGAGTATAATCATATGA
EST: gi|209727508|gb|BW663744.1|BW663744
EST:     GGGAATGGACCCGGTTCGGCTCTTTGAGAAACGGATGAATGCGCGGCGAG                         AAGCCGGATATAAATTTAATGAGGAAAAGTTGTTGGAGTATAATCATATGA
genomic: GGGAATGGACCCGGTTCGGCTCTTTGAGAAACGGATGAATGCGCGGCGAGgtaacggttc ... tttgtttcagAAGCCGGATATAAATTTAATGAGGAAAAGTTGTTGGAGTATAATCATATGA
EST: gi|51336196|gb|CO980062.1|CO980062
EST:     GGGAATGGACCCGGTTCGGCTCTTTGAGAAACGGATGAATGCGCGGCGAG                         AAGCCGGATATAAATTTAATGAGGAAAAGTTGTTGGAGTATAATCATATGA
genomic: GGGAATGGACCCGGTTCGGCTCTTTGAGAAACGGATGAATGCGCGGCGAGgtaacggttc ... tttgtttcagAAGCCGGATATAAATTTAATGAGGAAAAGTTGTTGGAGTATAATCATATGA
EST: gi|9258967|gb|BE347114.1|BE347114
EST:     GGGAATGGACCCGGTTCGGCTCTTTGAGAAACGGATGAATGCGCGGCGAG                         AAGCCGGATATAAATTTAATGAGGAAAAGTTGTTGGAGTATAATCATATGA
genomic: GGGAATGGACCCGGTTCGGCTCTTTGAGAAACGGATGAATGCGCGGCGAGgtaacggttc ... tttgtttcagAAGCCGGATATAAATTTAATGAGGAAAAGTTGTTGGAGTATAATCATATGA
EST: gi|57574769|gb|CX547744.1|CX547744
EST:     GGGAATGGACCCGGTTCGGCTCTTNGAGAAACGGATGAATGCGCGGCGAG                         AAGCCGGATATAAATTTAATGAGGAAAAGTTGTTGGAGTATAATCATATGA
genomic: GGGAATGGACCCGGTTCGGCTCTTTGAGAAACGGATGAATGCGCGGCGAGgtaacggttc ... tttgtttcagAAGCCGGATATAAATTTAATGAGGAAAAGTTGTTGGAGTATAATCATATGA
EST: gi|192294862|gb|FG987551.1|FG987551
EST:     GGGAATGGACCCGGTTCGGCTCTTTGAGAAACGGATGAATGCGCGGCGAG                         AAGCCGGATATAAATTTAATGAGGAAAGGTTGTTGGAGTATAATCATATGA
genomic: GGGAATGGACCCGGTTCGGCTCTTTGAGAAACGGATGAATGCGCGGCGAGgtaacggttc ... tttgtttcagAAGCCGGATATAAATTTAATGAGGAAAAGTTGTTGGAGTATAATCATATGA
EST: gi|9899175|gb|BE608202.1|BE608202
EST:     GGGAATGGACCCGGTTCGGCTCTTTGAGAAACGGATGAATGCGCGGCGAG                         AAGCCGGATATAAATTTAATGAGGAAAAGTTGTTGGAGTATAATCATATGA
genomic: GGGAATGGACCCGGTTCGGCTCTTTGAGAAACGGATGAATGCGCGGCGAGgtaacggttc ... tttgtttcagAAGCCGGATATAAATTTAATGAGGAAAAGTTGTTGGAGTATAATCATATGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccaccaagccaaaccttataactcctttgtgttgaatttgatgtgtttgtttcagAAGCCGGATATAAATTTAATGAGGAAAAGTTGTTGGAGTATAATCATATGAGTTTCGGAGGGCCGCCTGTTACTGTTGGATCGGACGAAGAAGCAAATGA
                                             tttgtttc  CT-rich tract
               ttataact  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaacggttcggctttggtgtgaattgtgttacatacttgaggcttgtgttgctagtttgttagtttttgttagtgggagggatttgaactcatgacctctccttctctcttctccttttaaccaccaagccaaaccttataactcctttgtgttgaatttgatgtgtttgtttcagAAGCCGGATATAAATTTAATGAGGAAAAGTTGTTGGAGTATAATCATATGAGTTTCGGAGGGCCGCCTGTTACTGTTGGATCGGACGAAGAAGCAAATGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA