1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ctcctactgagactgcaaagtataaacctcttggttccattcttcacagcacaattattagacttggtactctggtttgtgacaagagtgttttgtgcagGTCGATAATCTATGCTGCGTGCTTGGAGGGAATGGACCCGGTTCGGCTCTTTGAGAAACGGATGAATGCGCGGCGAG
species | Glycine max |
transcript | GLYMA20G02940.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GATAAGACGGGACGCTTCTGCAGCCCCAGAGCCGCCAGAGAACTCGCACT GTCGATAATCTGTGCTGCGTGCTTGGAGGGAATGGACCCGGTTCGGCTCTTEST: gi|213606310|gb|DB961370.1|DB961370
genomic: GATAAGACGGGACGCTTCTGCAGCCCCAGAGCCGCCAGAGAACTCGCACTgtaagttctt ... ttttgtgcagGTCGATAATCTATGCTGCGTGCTTGGAGGGAATGGACCCGGTTCGGCTCTT
EST: GATAAGACGGGACGCTTCTGCAGCCCCAGAGCCGCCAGAGAACTCGCACT GTCGATAATCTATGCTGCGTGCTTGGAGGGAATGGACCCGGTTCGGCTCTTEST: gi|9898905|gb|BE607873.1|BE607873
genomic: GATAAGACGGGACGCTTCTGCAGCCCCAGAGCCGCCAGAGAACTCGCACTgtaagttctt ... ttttgtgcagGTCGATAATCTATGCTGCGTGCTTGGAGGGAATGGACCCGGTTCGGCTCTT
EST: GATAAGACGGGACGCTTCTGCAGCCCCAGAGCCGCCAGAGAACTCGCACT GTCGATAATCTATGCTGCGTGCTTGGAGGGAATGGACCCGGTTCGGCTCTTEST: gi|254319101|gb|GR828829.1|GR828829
genomic: GATAAGACGGGACGCTTCTGCAGCCCCAGAGCCGCCAGAGAACTCGCACTgtaagttctt ... ttttgtgcagGTCGATAATCTATGCTGCGTGCTTGGAGGGAATGGACCCGGTTCGGCTCTT
EST: GATAAGACGGGACGCTTCTGCAGCCCCAGAGCCGCCAGAGAACTCGCACT GTCGATAATCTATGCTGCGTGCTTGGAGGGAATGGACCCGGTEST: gi|209727508|gb|BW663744.1|BW663744
genomic: GATAAGACGGGACGCTTCTGCAGCCCCAGAGCCGCCAGAGAACTCGCACTgtaagttctt ... ttttgtgcagGTCGATAATCTATGCTGCGTGCTTGGAGGGAATGGACCCGGT
EST: GATAAGACGGGACGCTTCTGCAGCCCCAGAGCCGCCAGAGAACTCGCACT GTCGATAATCTATGCTGCGTGCTTGGAGGGAATGGACCCGGTTCGGCTCTTEST: gi|9258967|gb|BE347114.1|BE347114
genomic: GATAAGACGGGACGCTTCTGCAGCCCCAGAGCCGCCAGAGAACTCGCACTgtaagttctt ... ttttgtgcagGTCGATAATCTATGCTGCGTGCTTGGAGGGAATGGACCCGGTTCGGCTCTT
EST: GATAAGACGGGACGCTTCTGCAGCCCCAGAGCCGCCAGAGAACTCGCACT GTCGATAATCTATGCTGCGTGCTTGGAGGGAATGGACCCGGTTCGGCTCTTEST: gi|57574769|gb|CX547744.1|CX547744
genomic: GATAAGACGGGACGCTTCTGCAGCCCCAGAGCCGCCAGAGAACTCGCACTgtaagttctt ... ttttgtgcagGTCGATAATCTATGCTGCGTGCTTGGAGGGAATGGACCCGGTTCGGCTCTT
EST: GGACGCTTCTGCAGCCCCAGAGCCGCCAGAGAACTCGCACT GTCGATAATCTATGCTGCGTGC-TGGAGGGAATGGACCCGGTTCGGCTCTTEST: gi|192294862|gb|FG987551.1|FG987551
genomic: GGACGCTTCTGCAGCCCCAGAGCCGCCAGAGAACTCGCACTgtaagttctt ... ttttgtgcagGTCGATAATCTATGCTGCGTGCTTGGAGGGAATGGACCCGGTTCGGCTCTT
EST: GATAAGACGGGACGCTTCTGCAGCCCCAGAGCCGCCAGAGAACTCGCACT GTCGATAATCTATGCTGCGTGCTTGGAGGGAATGGACCCGGTTCGGCTCTTEST: gi|9899175|gb|BE608202.1|BE608202
genomic: GATAAGACGGGACGCTTCTGCAGCCCCAGAGCCGCCAGAGAACTCGCACTgtaagttctt ... ttttgtgcagGTCGATAATCTATGCTGCGTGCTTGGAGGGAATGGACCCGGTTCGGCTCTT
EST: GATAAGACGGGACGCTTCTGCAGCCCCAGAGCCGCCAGAGAACTCGCACT GTCGATAATCTATGCTGCGTGCTTGGAGGGAATGGACCCGGTTCGGCTCTT
genomic: GATAAGACGGGACGCTTCTGCAGCCCCAGAGCCGCCAGAGAACTCGCACTgtaagttctt ... ttttgtgcagGTCGATAATCTATGCTGCGTGCTTGGAGGGAATGGACCCGGTTCGGCTCTT
acagcacaattattagacttggtactctggtttgtgacaagagtgttttgtgcagGTCGATAATCTATGCTGCGTGCTTGGAGGGAATGGACCCGGTTCGGCTCTTTGAGAAACGGATGAATGCGCGGCGAG
acaattatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcctactgagactgcaaagtataaacctcttggttccattcttcacagcacaattattagacttggtactctggtttgtgacaagagtgttttgtgcagGTCGATAATCTATGCTGCGTGCTTGGAGGGAATGGACCCGGTTCGGCTCTTTGAGAAACGGATGAATGCGCGGCGAG
ctcctac
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgacaag