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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCGATAATCTATGCTGCGTGCTTGGAGGGAATGGACCCGGTTCGGCTCTTTGAGAAACGGATGAATGCGCGGCGAGgtaacggttcggctttggtgtgaattgtgttacatacttgaggcttgtgttgctagtttgttagtttttgttagtgggagggatttgaactcatgacctctccttctctcttctccttttaaccaccaagccaaaccttataactcctttgtgttgaatttgatgtgtttgtttcag

Basic information

species Glycine max
transcript GLYMA20G02940.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298164712|gb|HO014357.1|HO014357
EST:     GGGAATGGACCCGGTTCGGCTCTTTGAGAAACGGATGAATGCGCGGCGAG                         AAGCCGGATATAAATTTAATGAGGAAAAGTTGTTGGAGTATAATCATATGA
genomic: GGGAATGGACCCGGTTCGGCTCTTTGAGAAACGGATGAATGCGCGGCGAGgtaacggttc ... tttgtttcagAAGCCGGATATAAATTTAATGAGGAAAAGTTGTTGGAGTATAATCATATGA
EST: gi|213606310|gb|DB961370.1|DB961370
EST:     GGGAATGGACCCGGTTCGGCTCTTTGAGAAACGGATGAATGCGCGGCGAG                         AAGCCGGATATAAATTTAATGAGGAAAAGTTGTTGGAGTATAATCATATGA
genomic: GGGAATGGACCCGGTTCGGCTCTTTGAGAAACGGATGAATGCGCGGCGAGgtaacggttc ... tttgtttcagAAGCCGGATATAAATTTAATGAGGAAAAGTTGTTGGAGTATAATCATATGA
EST: gi|9898905|gb|BE607873.1|BE607873
EST:     GGGAATGGACCCGGTTCGGCTCTTTGAGAAACGGATGAATGCGCGGCGAG                         AAGCCGGATATAAATTTAATGAGGAAAAGTTGTTGGAGTATAATCATATGA
genomic: GGGAATGGACCCGGTTCGGCTCTTTGAGAAACGGATGAATGCGCGGCGAGgtaacggttc ... tttgtttcagAAGCCGGATATAAATTTAATGAGGAAAAGTTGTTGGAGTATAATCATATGA
EST: gi|58019927|gb|CX706669.1|CX706669
EST:     GAGAAACGGATGAATGCGCGGCGAG                         AAGCCGGATATAAATTTAATGAGGAAAAGTTGTTGGAGTATAATCATATGA
genomic: GAGAAACGGATGAATGCGCGGCGAGgtaacggttc ... tttgtttcagAAGCCGGATATAAATTTAATGAGGAAAAGTTGTTGGAGTATAATCATATGA
EST: gi|209727508|gb|BW663744.1|BW663744
EST:     GGGAATGGACCCGGTTCGGCTCTTTGAGAAACGGATGAATGCGCGGCGAG                         AAGCCGGATATAAATTTAATGAGGAAAAGTTGTTGGAGTATAATCATATGA
genomic: GGGAATGGACCCGGTTCGGCTCTTTGAGAAACGGATGAATGCGCGGCGAGgtaacggttc ... tttgtttcagAAGCCGGATATAAATTTAATGAGGAAAAGTTGTTGGAGTATAATCATATGA
EST: gi|51336196|gb|CO980062.1|CO980062
EST:     GGGAATGGACCCGGTTCGGCTCTTTGAGAAACGGATGAATGCGCGGCGAG                         AAGCCGGATATAAATTTAATGAGGAAAAGTTGTTGGAGTATAATCATATGA
genomic: GGGAATGGACCCGGTTCGGCTCTTTGAGAAACGGATGAATGCGCGGCGAGgtaacggttc ... tttgtttcagAAGCCGGATATAAATTTAATGAGGAAAAGTTGTTGGAGTATAATCATATGA
EST: gi|9258967|gb|BE347114.1|BE347114
EST:     GGGAATGGACCCGGTTCGGCTCTTTGAGAAACGGATGAATGCGCGGCGAG                         AAGCCGGATATAAATTTAATGAGGAAAAGTTGTTGGAGTATAATCATATGA
genomic: GGGAATGGACCCGGTTCGGCTCTTTGAGAAACGGATGAATGCGCGGCGAGgtaacggttc ... tttgtttcagAAGCCGGATATAAATTTAATGAGGAAAAGTTGTTGGAGTATAATCATATGA
EST: gi|57574769|gb|CX547744.1|CX547744
EST:     GGGAATGGACCCGGTTCGGCTCTTNGAGAAACGGATGAATGCGCGGCGAG                         AAGCCGGATATAAATTTAATGAGGAAAAGTTGTTGGAGTATAATCATATGA
genomic: GGGAATGGACCCGGTTCGGCTCTTTGAGAAACGGATGAATGCGCGGCGAGgtaacggttc ... tttgtttcagAAGCCGGATATAAATTTAATGAGGAAAAGTTGTTGGAGTATAATCATATGA
EST: gi|192294862|gb|FG987551.1|FG987551
EST:     GGGAATGGACCCGGTTCGGCTCTTTGAGAAACGGATGAATGCGCGGCGAG                         AAGCCGGATATAAATTTAATGAGGAAAGGTTGTTGGAGTATAATCATATGA
genomic: GGGAATGGACCCGGTTCGGCTCTTTGAGAAACGGATGAATGCGCGGCGAGgtaacggttc ... tttgtttcagAAGCCGGATATAAATTTAATGAGGAAAAGTTGTTGGAGTATAATCATATGA
EST: gi|9899175|gb|BE608202.1|BE608202
EST:     GGGAATGGACCCGGTTCGGCTCTTTGAGAAACGGATGAATGCGCGGCGAG                         AAGCCGGATATAAATTTAATGAGGAAAAGTTGTTGGAGTATAATCATATGA
genomic: GGGAATGGACCCGGTTCGGCTCTTTGAGAAACGGATGAATGCGCGGCGAGgtaacggttc ... tttgtttcagAAGCCGGATATAAATTTAATGAGGAAAAGTTGTTGGAGTATAATCATATGA