1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATTCACCAAGAAACTATTGGTTGCAGTCAGGGATACATGGGACAGTCATGTCCTGGTCATTAACAAAATTGCCCCACAAAATTGGAAGgtatgataattgataaatacagtagcttttgtaatgaatttattattgatcatctcccccttgcaaattcatgaaccatggacacaatttctttttatag...
species | Glycine max |
transcript | GLYMA20G02940.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGGACAGTCATGTCCTGGTCATTAACAAAATTGCCCCACAAAATTGGAAG AATGAACCAGCTGCGAAGA-TTTAGAGCTGTCTATTCTTCACTTGGCCATGEST: gi|9898905|gb|BE607873.1|BE607873
genomic: GGGACAGTCATGTCCTGGTCATTAACAAAATTGCCCCACAAAATTGGAAGgtatgataat ... atgatttcagAATGAACCAGCTGCGAAGATTTTAGAGCTGTCTATTCTTCACTTGGCCATG
EST: GGGACAGTCATGTCCTGGTCATTAACAAAATTGCCCCACAAAATTGGAAG AATGAACCAGCTGCGAAGATTTTAGAGCTGTCTATTCTTCACTTGGCCATGEST: gi|58019927|gb|CX706669.1|CX706669
genomic: GGGACAGTCATGTCCTGGTCATTAACAAAATTGCCCCACAAAATTGGAAGgtatgataat ... atgatttcagAATGAACCAGCTGCGAAGATTTTAGAGCTGTCTATTCTTCACTTGGCCATG
EST: GGGACAGTCATGTCCTGGTCATTAACAAAATTGCCCCACAAAATTGGAAG AATGAACCAGCTGCGAAGATTTTAGAGCTGTCTATTCTTCACTTGGCCATGEST: gi|192314700|gb|FK006626.1|FK006626
genomic: GGGACAGTCATGTCCTGGTCATTAACAAAATTGCCCCACAAAATTGGAAGgtatgataat ... atgatttcagAATGAACCAGCTGCGAAGATTTTAGAGCTGTCTATTCTTCACTTGGCCATG
EST: GGGACAGTCATGTCCTGGTCATTAACAAAATTGCCCCACAAAATTGGAAG AATGAACCAGCTGCGAAGA-TTTAGAGCTGTCTATTCTTCACTTGGCCATGEST: gi|51336196|gb|CO980062.1|CO980062
genomic: GGGACAGTCATGTCCTGGTCATTAACAAAATTGCCCCACAAAATTGGAAGgtatgataat ... atgatttcagAATGAACCAGCTGCGAAGATTTTAGAGCTGTCTATTCTTCACTTGGCCATG
EST: GGGACAGTCATGTCCTGGTCATTAACAAAATTGCCCCACAAAATTGGAAG AATGAACCAGCTGCGAAGATTTTAGAGCTGTCTATTCTTCACTTGGCCATGEST: gi|57574769|gb|CX547744.1|CX547744
genomic: GGGACAGTCATGTCCTGGTCATTAACAAAATTGCCCCACAAAATTGGAAGgtatgataat ... atgatttcagAATGAACCAGCTGCGAAGATTTTAGAGCTGTCTATTCTTCACTTGGCCATG
EST: GGGACAGTCATGTCCTGGTCATTAACAAAATTGCCCCACAAAATTGGAAG AATGAACCAGCTGCGAAGATTTTAGAGCTGTCTATTCTTCACTTGGCCATGEST: gi|192316707|gb|FK006410.1|FK006410
genomic: GGGACAGTCATGTCCTGGTCATTAACAAAATTGCCCCACAAAATTGGAAGgtatgataat ... atgatttcagAATGAACCAGCTGCGAAGATTTTAGAGCTGTCTATTCTTCACTTGGCCATG
EST: GGGACAGTCATGTCCTGGTCATTAACAAAATTGCCCCACAAAATTGGAAG AATGAACCAGCTGCGAAGATTTTAGAGCTGTCTATTCTTCACTTGGCCATGEST: gi|9899175|gb|BE608202.1|BE608202
genomic: GGGACAGTCATGTCCTGGTCATTAACAAAATTGCCCCACAAAATTGGAAGgtatgataat ... atgatttcagAATGAACCAGCTGCGAAGATTTTAGAGCTGTCTATTCTTCACTTGGCCATG
EST: GGGACAGTCATGTCCTGGTCATTAACAAAATTGCCCCACAAAATTGGAAG AATGAACCAGCTGCGAAGATTTTAGAGCTGTCTATTCTTCACTTGGCCATGEST: gi|26058037|gb|CA800951.1|CA800951
genomic: GGGACAGTCATGTCCTGGTCATTAACAAAATTGCCCCACAAAATTGGAAGgtatgataat ... atgatttcagAATGAACCAGCTGCGAAGATTTTAGAGCTGTCTATTCTTCACTTGGCCATG
EST: GGGACAGTCATGTCCTGGTCATTAACAAAATTGCCCCACAAAATTGGAAG AATGAACCAGCTGCGAAGATTTTAGAGCTGTCTATTCTTCACTTGGCCATG
genomic: GGGACAGTCATGTCCTGGTCATTAACAAAATTGCCCCACAAAATTGGAAGgtatgataat ... atgatttcagAATGAACCAGCTGCGAAGATTTTAGAGCTGTCTATTCTTCACTTGGCCATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTCACCAAGAAACTATTGGTTGCAGTCAGGGATACATGGGACAGTCATGTCCTGGTCATTAACAAAATTGCCCCACAAAATTGGAAGgtatgataattgataaatacagtagcttttgtaatgaatttattattgatcatctcccccttgcaaattcatgaaccatggacacaatttctttttatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccccc