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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGCAAACCCGATAACAACAACAACTCTTCACCCTATCTTCCCAAAATCGATAAGACGGGACGCTTCTGCAGCCCCAGAGCCGCCAGAGAACTCGCACTgtaagttcttttattttatcggttagtggttagtttttgttgttaccttagtggggaattccaagttcgaagccactaatattactattactatattagt...

Basic information

species Glycine max
transcript GLYMA20G02940.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298164712|gb|HO014357.1|HO014357
EST:     GATAAGACGGGACGCTTCTGCAGCCCCAGAGCCGCCAGAGAACTCGCACT                         GTCGATAATCTGTGCTGCGTGCTTGGAGGGAATGGACCCGGTTCGGCTCTT
genomic: GATAAGACGGGACGCTTCTGCAGCCCCAGAGCCGCCAGAGAACTCGCACTgtaagttctt ... ttttgtgcagGTCGATAATCTATGCTGCGTGCTTGGAGGGAATGGACCCGGTTCGGCTCTT
EST: gi|213606310|gb|DB961370.1|DB961370
EST:     GATAAGACGGGACGCTTCTGCAGCCCCAGAGCCGCCAGAGAACTCGCACT                         GTCGATAATCTATGCTGCGTGCTTGGAGGGAATGGACCCGGTTCGGCTCTT
genomic: GATAAGACGGGACGCTTCTGCAGCCCCAGAGCCGCCAGAGAACTCGCACTgtaagttctt ... ttttgtgcagGTCGATAATCTATGCTGCGTGCTTGGAGGGAATGGACCCGGTTCGGCTCTT
EST: gi|9898905|gb|BE607873.1|BE607873
EST:     GATAAGACGGGACGCTTCTGCAGCCCCAGAGCCGCCAGAGAACTCGCACT                         GTCGATAATCTATGCTGCGTGCTTGGAGGGAATGGACCCGGTTCGGCTCTT
genomic: GATAAGACGGGACGCTTCTGCAGCCCCAGAGCCGCCAGAGAACTCGCACTgtaagttctt ... ttttgtgcagGTCGATAATCTATGCTGCGTGCTTGGAGGGAATGGACCCGGTTCGGCTCTT
EST: gi|254319101|gb|GR828829.1|GR828829
EST:     GATAAGACGGGACGCTTCTGCAGCCCCAGAGCCGCCAGAGAACTCGCACT                         GTCGATAATCTATGCTGCGTGCTTGGAGGGAATGGACCCGGT
genomic: GATAAGACGGGACGCTTCTGCAGCCCCAGAGCCGCCAGAGAACTCGCACTgtaagttctt ... ttttgtgcagGTCGATAATCTATGCTGCGTGCTTGGAGGGAATGGACCCGGT
EST: gi|209727508|gb|BW663744.1|BW663744
EST:     GATAAGACGGGACGCTTCTGCAGCCCCAGAGCCGCCAGAGAACTCGCACT                         GTCGATAATCTATGCTGCGTGCTTGGAGGGAATGGACCCGGTTCGGCTCTT
genomic: GATAAGACGGGACGCTTCTGCAGCCCCAGAGCCGCCAGAGAACTCGCACTgtaagttctt ... ttttgtgcagGTCGATAATCTATGCTGCGTGCTTGGAGGGAATGGACCCGGTTCGGCTCTT
EST: gi|9258967|gb|BE347114.1|BE347114
EST:     GATAAGACGGGACGCTTCTGCAGCCCCAGAGCCGCCAGAGAACTCGCACT                         GTCGATAATCTATGCTGCGTGCTTGGAGGGAATGGACCCGGTTCGGCTCTT
genomic: GATAAGACGGGACGCTTCTGCAGCCCCAGAGCCGCCAGAGAACTCGCACTgtaagttctt ... ttttgtgcagGTCGATAATCTATGCTGCGTGCTTGGAGGGAATGGACCCGGTTCGGCTCTT
EST: gi|57574769|gb|CX547744.1|CX547744
EST:     GGACGCTTCTGCAGCCCCAGAGCCGCCAGAGAACTCGCACT                         GTCGATAATCTATGCTGCGTGC-TGGAGGGAATGGACCCGGTTCGGCTCTT
genomic: GGACGCTTCTGCAGCCCCAGAGCCGCCAGAGAACTCGCACTgtaagttctt ... ttttgtgcagGTCGATAATCTATGCTGCGTGCTTGGAGGGAATGGACCCGGTTCGGCTCTT
EST: gi|192294862|gb|FG987551.1|FG987551
EST:     GATAAGACGGGACGCTTCTGCAGCCCCAGAGCCGCCAGAGAACTCGCACT                         GTCGATAATCTATGCTGCGTGCTTGGAGGGAATGGACCCGGTTCGGCTCTT
genomic: GATAAGACGGGACGCTTCTGCAGCCCCAGAGCCGCCAGAGAACTCGCACTgtaagttctt ... ttttgtgcagGTCGATAATCTATGCTGCGTGCTTGGAGGGAATGGACCCGGTTCGGCTCTT
EST: gi|9899175|gb|BE608202.1|BE608202
EST:     GATAAGACGGGACGCTTCTGCAGCCCCAGAGCCGCCAGAGAACTCGCACT                         GTCGATAATCTATGCTGCGTGCTTGGAGGGAATGGACCCGGTTCGGCTCTT
genomic: GATAAGACGGGACGCTTCTGCAGCCCCAGAGCCGCCAGAGAACTCGCACTgtaagttctt ... ttttgtgcagGTCGATAATCTATGCTGCGTGCTTGGAGGGAATGGACCCGGTTCGGCTCTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGGCAAACCCGATAACAACAACAACTCTTCACCCTATCTTCCCAAAATCGATAAGACGGGACGCTTCTGCAGCCCCAGAGCCGCCAGAGAACTCGCACTgtaagttcttttattttatcggttagtggttagtttttgttgttaccttagtggggaattccaagttcgaagccactaatattactattactatattagt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgggga