1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...catattcacgtgcccatgttgtatgaaaaatgtttatcttgtatggtatagttttcacacaaacaccaaaaaaataactctgtatataattgttttgaagGCGGTAGATCTTGCTAAACGGTTTTGTGATGGAGCAGCCCCTCGCATCATTAACGGCTGTCTCCGCACATTTTTCCGAGAACTGGAGCTTGAAGCATCGA
species | Glycine max |
transcript | GLYMA20G02940.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGTCCGAAATGGAAGTGCTAGAAACGAGACACCAAATCGTCATTAATGAG GCGGTAGATCTTGCTAAACGGTTTTGTGATGGAGCAGCCCCTCGCATCATTEST: gi|58019927|gb|CX706669.1|CX706669
genomic: TGTCCGAAATGGAAGTGCTAGAAACGAGACACCAAATCGTCATTAATGAGgtacatctta ... tgttttgaagGCGGTAGATCTTGCTAAACGGTTTTGTGATGGAGCAGCCCCTCGCATCATT
EST: TGTCCGAAATGGAAGTGCTAGAAACGAGACACCAAATCGTCATTAATGAG GCGGTAGATCTTGCTAAACGGTTTTGTGATGGAGCAGCCCCTCGCATCATTEST: gi|192314700|gb|FK006626.1|FK006626
genomic: TGTCCGAAATGGAAGTGCTAGAAACGAGACACCAAATCGTCATTAATGAGgtacatctta ... tgttttgaagGCGGTAGATCTTGCTAAACGGTTTTGTGATGGAGCAGCCCCTCGCATCATT
EST: TGTCCGAAATGGAAGTGCTAGAAACGAGACACCAAATCGTCATTAATGAG GCGGTAGATCTTGCTAAACGGTTTTGTGATGGAGCAGCCCCTCGCATCATTEST: gi|193394871|gb|FK359044.1|FK359044
genomic: TGTCCGAAATGGAAGTGCTAGAAACGAGACACCAAATCGTCATTAATGAGgtacatctta ... tgttttgaagGCGGTAGATCTTGCTAAACGGTTTTGTGATGGAGCAGCCCCTCGCATCATT
EST: CACCAAATCGTCATTAATGAG GCGGTAGATCTTACTAAACGGTTTTGTGATGGAGCAGCCCCTCGCATCATTEST: gi|51336196|gb|CO980062.1|CO980062
genomic: CACCAAATCGTCATTAATGAGgtacatctta ... tgttttgaagGCGGTAGATCTTGCTAAACGGTTTTGTGATGGAGCAGCCCCTCGCATCATT
EST: TGTCCGAAATGGAAGTGCTAGAAACGAGACACCAAATCGTCATTAATGAG GCGGTAGATCTTGCTAAACGGTTTTGTGATGGAGCAGCCCCTCGCATCATTEST: gi|57574769|gb|CX547744.1|CX547744
genomic: TGTCCGAAATGGAAGTGCTAGAAACGAGACACCAAATCGTCATTAATGAGgtacatctta ... tgttttgaagGCGGTAGATCTTGCTAAACGGTTTTGTGATGGAGCAGCCCCTCGCATCATT
EST: TGTCCGAAATGGAAGTGCTAGAAACGAGACACCAAATCGTCATTAATGAG GCGGTAGATCTTGCTAAACGGTTTTGTGATGGAGCAGCCCCTCGCATCATTEST: gi|192316707|gb|FK006410.1|FK006410
genomic: TGTCCGAAATGGAAGTGCTAGAAACGAGACACCAAATCGTCATTAATGAGgtacatctta ... tgttttgaagGCGGTAGATCTTGCTAAACGGTTTTGTGATGGAGCAGCCCCTCGCATCATT
EST: TGTCCGAAATGGAAGTGCTAGAAACGAGACACCAAATCGTCATTAATGAG GCGGTAGATCTTGCTAAACGGTTTTGTGATGGAGCAGCCCCTCGCATCATTEST: gi|9899175|gb|BE608202.1|BE608202
genomic: TGTCCGAAATGGAAGTGCTAGAAACGAGACACCAAATCGTCATTAATGAGgtacatctta ... tgttttgaagGCGGTAGATCTTGCTAAACGGTTTTGTGATGGAGCAGCCCCTCGCATCATT
EST: TCCGAANATG-AAGTGCTAGAAACGAGACACCAAATCGTCATTAATGGAG -CGGTAGATCTTGGCTAACCGGTTT-GTGATGGAGCAGCCCCTCGCATCAEST: gi|26058037|gb|CA800951.1|CA800951
genomic: TCCGAA-ATGGAAGTGCTAGAAACGAGACACCAAATCGTCATTAATG-AGgtacatctta ... tgttttgaagGCGGTAGATCTTG-CTAAACGGTTTTGTGATGGAGCAGCCCCTCGCATCA
EST: TGTCCGAAATGGAAGTGCTAGAAACGAGACACCAAATCGTCATTAATGAG GCGGTAGATCTTGCTAAACGGTTTTGTGATGGAGCAGCCCCTCGCATCATT
genomic: TGTCCGAAATGGAAGTGCTAGAAACGAGACACCAAATCGTCATTAATGAGgtacatctta ... tgttttgaagGCGGTAGATCTTGCTAAACGGTTTTGTGATGGAGCAGCCCCTCGCATCATT
gtatagttttcacacaaacaccaaaaaaataactctgtatataattgttttgaagGCGGTAGATCTTGCTAAACGGTTTTGTGATGGAGCAGCCCCTCGCATCATTAACGGCTGTCTCCGCACATTTTTCCGAGAACTGGAGCTTGAAGCATCGA
aaataac putative branch site (score: 2)
ttgtttt putative PPT
aaaaaaataactctgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catattcacgtgcccatgttgtatgaaaaatgtttatcttgtatggtatagttttcacacaaacaccaaaaaaataactctgtatataattgttttgaagGCGGTAGATCTTGCTAAACGGTTTTGTGATGGAGCAGCCCCTCGCATCATTAACGGCTGTCTCCGCACATTTTTCCGAGAACTGGAGCTTGAAGCATCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - cgtgccc
- - - - - - - - - -tgtatga
- - - - - - - - - - - - - - - - - - - -tgtatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctgta