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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgcactagatctggagtattggatttcagataattgctttaatatttaaatatcataagcaaacttaataaaatcagcagtggaagtgcatatttcataatgacagcttctacaatttttttttgtttgtgtgctggcagGTGCCACTCAGAATTCAATCAAGGTTGCTCAA

Basic information

species Glycine max
transcript GLYMA19G36630.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192295218|gb|FG986937.1|FG986937
EST:     GTATCAAGAATTGGCTGAGAAATATAATGTGGAGTACATTGCTGGAG                         GTGCCACTCAGAATTCAATCAAGGTTGCTCAA
genomic: GTATCAAGAATTGGCTGAGAAATATAATGTGGAGTACATTGCTGGAGgtactgcact ... gtgctggcagGTGCCACTCAGAATTCAATCAAGGTTGCTCAA
EST: gi|151393153|gb|EV263028.1|EV263028
EST:     GTATCAAGAATTGGCTGAGAAATATAATGTGGAGTACATTGCTGGAG                         GTGCCACTCAGAATTCAATCAAGGTTGCTCAA
genomic: GTATCAAGAATTGGCTGAGAAATATAATGTGGAGTACATTGCTGGAGgtactgcact ... gtgctggcagGTGCCACTCAGAATTCAATCAAGGTTGCTCAA
EST: gi|26045675|gb|CA783183.1|CA783183
EST:     GTATCAAGAATTGGCTGAGAAATATAATGTGGAGTACATTGCTGGAG                         GTGCCACTCAGAATTCAATCAAGGTTGCTCAA
genomic: GTATCAAGAATTGGCTGAGAAATATAATGTGGAGTACATTGCTGGAGgtactgcact ... gtgctggcagGTGCCACTCAGAATTCAATCAAGGTTGCTCAA
EST: gi|298170787|gb|HO015763.1|HO015763
EST:     GTATCAAGAATTGGCTGAGAAATATAATGTGGAGTACATTGCTGGAG                         GTGCCACTCAAAATTCAATCAAGGTTGCTCAA
genomic: GTATCAAGAATTGGCTGAGAAATATAATGTGGAGTACATTGCTGGAGgtactgcact ... gtgctggcagGTGCCACTCAGAATTCAATCAAGGTTGCTCAA
EST: gi|192304064|gb|FG993894.1|FG993894
EST:     GTATCAAGAATTGGCTGAGAAATATAATGTGGAGTACATTGCTGGAG                         GTGCCACTCAGAATTCAATCAAGGTTGCTCAA
genomic: GTATCAAGAATTGGCTGAGAAATATAATGTGGAGTACATTGCTGGAGgtactgcact ... gtgctggcagGTGCCACTCAGAATTCAATCAAGGTTGCTCAA
EST: gi|298177311|gb|HO027092.1|HO027092
EST:     GTATCAAGAATTGGCTGAGAAATATAATGTGGAGTACATTGCTGGAG                         GTGCCACTCAGAATTCAATCAAGGTTGCTCAA
genomic: GTATCAAGAATTGGCTGAGAAATATAATGTGGAGTACATTGCTGGAGgtactgcact ... gtgctggcagGTGCCACTCAGAATTCAATCAAGGTTGCTCAA
EST: gi|298165993|gb|HO008964.1|HO008964
EST:     GTATCAAGAATTGGCTGAGAAATATAATGTGGAGTACATTGCTGGAG                         GTGCCACTCAGAATTCAATCAAGGTTGCTCAA
genomic: GTATCAAGAATTGGCTGAGAAATATAATGTGGAGTACATTGCTGGAGgtactgcact ... gtgctggcagGTGCCACTCAGAATTCAATCAAGGTTGCTCAA
EST: gi|298182073|gb|HO026248.1|HO026248
EST:     GTATCAAGAATTGGCTGAGAAATATAATGTGGAGTACATTGCTGGAG                         GTGCCACTCAGAATTCAATCAAGGTTGCTCAA
genomic: GTATCAAGAATTGGCTGAGAAATATAATGTGGAGTACATTGCTGGAGgtactgcact ... gtgctggcagGTGCCACTCAGAATTCAATCAAGGTTGCTCAA
EST: gi|26045783|gb|CA783264.1|CA783264
EST:     GTATCAAGAATTGGCTGAGAAATATAATGTGGAGTACATTGCTGGAG                         GTGCCACTCAGAATTCAATCAAGGTTGCTCAA
genomic: GTATCAAGAATTGGCTGAGAAATATAATGTGGAGTACATTGCTGGAGgtactgcact ... gtgctggcagGTGCCACTCAGAATTCAATCAAGGTTGCTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgcatatttcataatgacagcttctacaatttttttttgtttgtgtgctggcagGTGCCACTCAGAATTCAATCAAGGTTGCTCAA
                      ttctacaatttttttt  TA-rich tract