Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATACGGACTTTGTTTTCGGAAATGAGACTGAAGCAAGAACATTTTCTAAAGTTCATGGCTGGGAGgtaagccttgtatgtcaaatttgtaggcttgcagttttggttttgaatgttaaccccttacatcttttgacccccccccccccctgttttttctag

Basic information

species Glycine max
transcript GLYMA19G36630.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G36630.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os04g43750.2 (Oryza sativa), 5'ss of exon 10
GTATACGGACTTTGTTTTCGGAAATGAGACTGAAGCAAGAACATTTTCTAAAGTTCATGGCTGGGAGgtaagccttgtatgtca---aatttgtaggcttgcagttttggttttgaatgttaaccccttacatcttttgacccccccccccccctgttttttctag
|||| | |||| | |||| |||||||| ||||||||||| || ||| ||||||||| ||| ||||||||||   |    | |||   | | |   |   ||    |   || || |    |   || ||| |    |||                           
GTATGCTGACTATATTTTTGGAAATGAAACTGAAGCAAGGACCTTTGCTAAAGTTCGTGGTTGGGAGgtaatagtcacttatcacctattattctgttctgtgagtaaagtatttacaaattgtccattaaaaaaattgtag------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10254148|gb|BE821914.1|BE821914
EST:     TCGGAAATGAGACTGAAGCAAGAACATTTTCTAAAGTTCATGGCTGGGAG                         ACTGATAATGTCGAGGAGATAGCTGTAAAGATTTCCCAATGGCCAAAGGCA
genomic: TCGGAAATGAGACTGAAGCAAGAACATTTTCTAAAGTTCATGGCTGGGAGgtaagccttg ... ttttttctagACTGATAATGTCGAGGAGATAGCTGTAAAGATTTCCCAATGGCCAAAGGCA
EST: gi|192295218|gb|FG986937.1|FG986937
EST:     TCGGAAATGAGACTGAAGCAAGAACATTTTCTATAGTTCATGGCTGGGAG                         ACTGATAATGTCGAGGAGATAGCTGTAAAGATTTCCCAATGGC
genomic: TCGGAAATGAGACTGAAGCAAGAACATTTTCTAAAGTTCATGGCTGGGAGgtaagccttg ... ttttttctagACTGATAATGTCGAGGAGATAGCTGTAAAGATTTCCCAATGGC
EST: gi|151393153|gb|EV263028.1|EV263028
EST:     TCGGAAATGAGACTGAAGCAAGAACATTTTCTAAAGTTCATGGCTGGGAG                         ACTGATAATGTCGAGGAGATAGCTGTA
genomic: TCGGAAATGAGACTGAAGCAAGAACATTTTCTAAAGTTCATGGCTGGGAGgtaagccttg ... ttttttctagACTGATAATGTCGAGGAGATAGCTGTA
EST: gi|26045675|gb|CA783183.1|CA783183
EST:     TCGGAAATGAGACTGAAGCAAGAACATTTTCTGAAGTTCATGGCTGGGAG                         ACTGATAATGTCGAGGAGATAGCTGTAAAGATTTCCCAATGGGCAAAGGCA
genomic: TCGGAAATGAGACTGAAGCAAGAACATTTTCTAAAGTTCATGGCTGGGAGgtaagccttg ... ttttttctagACTGATAATGTCGAGGAGATAGCTGTAAAGATTTCCCAATGGCCAAAGGCA
EST: gi|192304065|gb|FG993895.1|FG993895
EST:     TCGGAAATGAGACTGAAGCAAGAACATTTTCTAAAGTTCATGGCTGGGAG                         ACTGATAATGTCGAGGAGATAGCTGTAAAGATTTCCCAATGGCCAAAGGCA
genomic: TCGGAAATGAGACTGAAGCAAGAACATTTTCTAAAGTTCATGGCTGGGAGgtaagccttg ... ttttttctagACTGATAATGTCGAGGAGATAGCTGTAAAGATTTCCCAATGGCCAAAGGCA
EST: gi|192329141|gb|FK021128.1|FK021128
EST:     AGCAAGAACATTTTCTAAAGTTCATGGCTGGGAG                         ACTGATAATGTCGAGGAGATAGCTGTAAAGATTTCCCAATGGCCAAAGGCA
genomic: AGCAAGAACATTTTCTAAAGTTCATGGCTGGGAGgtaagccttg ... ttttttctagACTGATAATGTCGAGGAGATAGCTGTAAAGATTTCCCAATGGCCAAAGGCA
EST: gi|6455199|gb|AW185882.1|AW185882
EST:     TCGGAAATGAGACTGAAGCAAGAACATTTTCTAAAGTTCATGGCTGGGAG                         ACTGATAATGTCGAGGAGATAGCTGTAAAGATTTCCCAATGGCCAAAGGCA
genomic: TCGGAAATGAGACTGAAGCAAGAACATTTTCTAAAGTTCATGGCTGGGAGgtaagccttg ... ttttttctagACTGATAATGTCGAGGAGATAGCTGTAAAGATTTCCCAATGGCCAAAGGCA
EST: gi|26045783|gb|CA783264.1|CA783264
EST:     TCGGAAATGAGACTGAAGCAAGAACATTTTCTAAAGTTCATGGCTGGGAG                         ACTGATAATGTCGAGGAGATAGCTGTAAAGATTTCCCAATGGCCAAAGGCA
genomic: TCGGAAATGAGACTGAAGCAAGAACATTTTCTAAAGTTCATGGCTGGGAGgtaagccttg ... ttttttctagACTGATAATGTCGAGGAGATAGCTGTAAAGATTTCCCAATGGCCAAAGGCA
EST: gi|37996713|gb|CF808302.1|CF808302
EST:     TCGGAAATGAGACTGAAGCAAGAACATTTTCTAAAGTTCATGGCTGGGAG                         ACTGATAATGTCGAGGAGATAGCTGTAAAGATTTCCCAATGGCCAAAGGCA
genomic: TCGGAAATGAGACTGAAGCAAGAACATTTTCTAAAGTTCATGGCTGGGAGgtaagccttg ... ttttttctagACTGATAATGTCGAGGAGATAGCTGTAAAGATTTCCCAATGGCCAAAGGCA
EST: gi|192329140|gb|FK021127.1|FK021127
EST:     TCGGAAATGAGACTGAAGCAAGAACATTTTCTAAAGTTCATGGCTGGGAG                         ACTGATAATGTCGAGGAGATAGCTGTAAAGATTTCCCAATGGCCAAAGGCA
genomic: TCGGAAATGAGACTGAAGCAAGAACATTTTCTAAAGTTCATGGCTGGGAGgtaagccttg ... ttttttctagACTGATAATGTCGAGGAGATAGCTGTAAAGATTTCCCAATGGCCAAAGGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTATACGGACTTTGTTTTCGGAAATGAGACTGAAGCAAGAACATTTTCTAAAGTTCATGGCTGGGAGgtaagccttgtatgtcaaatttgtaggcttgcagttttggttttgaatgttaaccccttacatcttttgacccccccccccccctgttttttctag

- - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - AAGAAC