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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagccttgtatgtcaaatttgtaggcttgcagttttggttttgaatgttaaccccttacatcttttgacccccccccccccctgttttttctagACTGATAATGTCGAGGAGATAGCTGTAAAGATTTCCCAATGGCCAAAGGCATCAGGAACACACAAAAGGATAACAGTTATCACACAGGGTGCGGATCCTA

Basic information

species Glycine max
transcript GLYMA19G36630.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G36630.1 (Glycine max), 3'ss of exon 10
lower sequence: GRMZM2G089767_T01 (Zea mays), 3'ss of exon 8
gtaagccttgtatgtcaaatttgtaggcttgcagttttggttttgaatgttaaccccttacatcttttgacccccccccccccctgttttttctagACTGATAATGTCGAGGAGATAGCTGTAAAGATTTCCCAATGGCCAAAGGCATCAGGAACACACAAAAGGATAACAGTTATCACACAGGGTGCGGATCCTA
                   |   ||  | |       | ||| |      ||      || |  || | |      |          ||| |  |||| || ||||| |||||||| ||| | ||||| |||||||  || ||||| |||||||||||||| | ||| || |||||||| || |||   |||||  
------------------gtaactactcatatgtcccttgttattttcactaggttaataaagtttctaaaaggttctgaatgaaaatttat--agACCGAGAATGTTGAGGAGATCGCTTTGAAGATCTCCCAATTACCGAAGGCTTCAGGAACACACAAGAAGATTACTGTTATCACTCAAGGTTGCGATCCGG

upper sequence: GLYMA19G36630.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv13s0019g04480.t01 (Vitis vinifera), 3'ss of exon 10
gtaagccttgt---atgtcaaatttgtaggcttgcagttttggttttgaatgttaaccccttacatcttttgacccccccccccc-cctgttttttctagACTGATAATGTCGAGGAGATAGCTGTAAAGATTTCCCAATGGCCAAAGGCATCAGGAACACACAAAAGGATAACAGTTATCACACAGGGTGCGGATCCTA
||| |  ||      |||   ||||||    |     || | |      |    ||      | ||    |  || |      |   || || |    |||||||||| || |||||||| ||  |||| || || ||||||||||| |||||||| |||||||| || || || || ||||| || ||||| |||||| 
gtagggattacttggtgttggatttgttt-ttgatgattgttgccccctacaggaaggaaaaaaatggaatttcctcatttggctgtcttttgtgatcagACTGATAACGTTGAGGAGATTGCAATAAAAATATCTCAATGGCCAAAAGCATCAGGGACACACAAGAGAATTACTGTGATCACTCAAGGTGCAGATCCTG

upper sequence: GLYMA19G36630.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv13s0019g04470.t01 (Vitis vinifera), 3'ss of exon 10
gtaagccttgt---atgtcaaatttgtaggcttgcagttttggttttgaatgttaaccccttacatcttttgacccccccccccccctgttttttctagACTGATAATGTCGAGGAGATAGCTGTAAAGATTTCCCAATGGCCAAAGGCATCAGGAACACACAAAAGGATAACAGTTATCACACAGGGTGCGGATCCTA
||| |  ||      |||   || |||        | | ||||     |     |       | |    ||  | |      |   || || |    ||||||||||||| |||||||| ||  |||| || || ||||||||||| |||||||| |||||||| || || || || ||||| || ||||| |||||| 
gtagggattacttggtgttggatctgtttttgatgattgttggcccctacaagaaggaaaaaaaaggaatttcctcatttggctgtcttttgtgatcagACTGATAATGTTGAGGAGATTGCAATAAAAATATCTCAATGGCCAAAAGCATCAGGGACACACAAGAGAATTACTGTGATCACTCAAGGTGCAGATCCTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10254148|gb|BE821914.1|BE821914
EST:     TCGGAAATGAGACTGAAGCAAGAACATTTTCTAAAGTTCATGGCTGGGAG                         ACTGATAATGTCGAGGAGATAGCTGTAAAGATTTCCCAATGGCCAAAGGCA
genomic: TCGGAAATGAGACTGAAGCAAGAACATTTTCTAAAGTTCATGGCTGGGAGgtaagccttg ... ttttttctagACTGATAATGTCGAGGAGATAGCTGTAAAGATTTCCCAATGGCCAAAGGCA
EST: gi|192295218|gb|FG986937.1|FG986937
EST:     TCGGAAATGAGACTGAAGCAAGAACATTTTCTATAGTTCATGGCTGGGAG                         ACTGATAATGTCGAGGAGATAGCTGTAAAGATTTCCCAATGGC
genomic: TCGGAAATGAGACTGAAGCAAGAACATTTTCTAAAGTTCATGGCTGGGAGgtaagccttg ... ttttttctagACTGATAATGTCGAGGAGATAGCTGTAAAGATTTCCCAATGGC
EST: gi|151393153|gb|EV263028.1|EV263028
EST:     TCGGAAATGAGACTGAAGCAAGAACATTTTCTAAAGTTCATGGCTGGGAG                         ACTGATAATGTCGAGGAGATAGCTGTA
genomic: TCGGAAATGAGACTGAAGCAAGAACATTTTCTAAAGTTCATGGCTGGGAGgtaagccttg ... ttttttctagACTGATAATGTCGAGGAGATAGCTGTA
EST: gi|26045675|gb|CA783183.1|CA783183
EST:     TCGGAAATGAGACTGAAGCAAGAACATTTTCTGAAGTTCATGGCTGGGAG                         ACTGATAATGTCGAGGAGATAGCTGTAAAGATTTCCCAATGGGCAAAGGCA
genomic: TCGGAAATGAGACTGAAGCAAGAACATTTTCTAAAGTTCATGGCTGGGAGgtaagccttg ... ttttttctagACTGATAATGTCGAGGAGATAGCTGTAAAGATTTCCCAATGGCCAAAGGCA
EST: gi|192304065|gb|FG993895.1|FG993895
EST:     TCGGAAATGAGACTGAAGCAAGAACATTTTCTAAAGTTCATGGCTGGGAG                         ACTGATAATGTCGAGGAGATAGCTGTAAAGATTTCCCAATGGCCAAAGGCA
genomic: TCGGAAATGAGACTGAAGCAAGAACATTTTCTAAAGTTCATGGCTGGGAGgtaagccttg ... ttttttctagACTGATAATGTCGAGGAGATAGCTGTAAAGATTTCCCAATGGCCAAAGGCA
EST: gi|192329141|gb|FK021128.1|FK021128
EST:     AGCAAGAACATTTTCTAAAGTTCATGGCTGGGAG                         ACTGATAATGTCGAGGAGATAGCTGTAAAGATTTCCCAATGGCCAAAGGCA
genomic: AGCAAGAACATTTTCTAAAGTTCATGGCTGGGAGgtaagccttg ... ttttttctagACTGATAATGTCGAGGAGATAGCTGTAAAGATTTCCCAATGGCCAAAGGCA
EST: gi|6455199|gb|AW185882.1|AW185882
EST:     TCGGAAATGAGACTGAAGCAAGAACATTTTCTAAAGTTCATGGCTGGGAG                         ACTGATAATGTCGAGGAGATAGCTGTAAAGATTTCCCAATGGCCAAAGGCA
genomic: TCGGAAATGAGACTGAAGCAAGAACATTTTCTAAAGTTCATGGCTGGGAGgtaagccttg ... ttttttctagACTGATAATGTCGAGGAGATAGCTGTAAAGATTTCCCAATGGCCAAAGGCA
EST: gi|26045783|gb|CA783264.1|CA783264
EST:     TCGGAAATGAGACTGAAGCAAGAACATTTTCTAAAGTTCATGGCTGGGAG                         ACTGATAATGTCGAGGAGATAGCTGTAAAGATTTCCCAATGGCCAAAGGCA
genomic: TCGGAAATGAGACTGAAGCAAGAACATTTTCTAAAGTTCATGGCTGGGAGgtaagccttg ... ttttttctagACTGATAATGTCGAGGAGATAGCTGTAAAGATTTCCCAATGGCCAAAGGCA
EST: gi|37996713|gb|CF808302.1|CF808302
EST:     TCGGAAATGAGACTGAAGCAAGAACATTTTCTAAAGTTCATGGCTGGGAG                         ACTGATAATGTCGAGGAGATAGCTGTAAAGATTTCCCAATGGCCAAAGGCA
genomic: TCGGAAATGAGACTGAAGCAAGAACATTTTCTAAAGTTCATGGCTGGGAGgtaagccttg ... ttttttctagACTGATAATGTCGAGGAGATAGCTGTAAAGATTTCCCAATGGCCAAAGGCA
EST: gi|192329140|gb|FK021127.1|FK021127
EST:     TCGGAAATGAGACTGAAGCAAGAACATTTTCTAAAGTTCATGGCTGGGAG                         ACTGATAATGTCGAGGAGATAGCTGTAAAGATTTCCCAATGGCCAAAGGCA
genomic: TCGGAAATGAGACTGAAGCAAGAACATTTTCTAAAGTTCATGGCTGGGAGgtaagccttg ... ttttttctagACTGATAATGTCGAGGAGATAGCTGTAAAGATTTCCCAATGGCCAAAGGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgaatgttaaccccttacatcttttgacccccccccccccctgttttttctagACTGATAATGTCGAGGAGATAGCTGTAAAGATTTCCCAATGGCCAAAGGCATCAGGAACACACAAAAGGATAACAGTTATCACACAGGGTGCGGATCCTA
            ccccttacatcttttg  CT-rich tract
                                             ttttttcta  TA-rich tract