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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGGGTGCGGATCCTATTTGTGTTGCTGAGGATGGGAAGGTGAAAAAGTTCCTGTGAAACTTTTGCCTAAAGAGAAACTAGTTGATACAAATGGAGCAGgtactgtgctacttcttttaggagttgaaatgtggaacttgcatatataattattatgtatttatgttcataaaagttatctatcttgtactggtctttc...

Basic information

species Glycine max
transcript GLYMA19G36630.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10254148|gb|BE821914.1|BE821914
EST:     CCCTGTGAAACTTTTGCCTAAAGAGAAACTAGTTGATACAAATGGAGCAG                         GAGATGCATTTGTTGGAGGATTTCTTTCTCAATTGGTTCAGGAGAAGCCCA
genomic: -CCTGTGAAACTTTTGCCTAAAGAGAAACTAGTTGATACAAATGGAGCAGgtactgtgct ... gtgtttgtagGAGATGCATTTGTTGGAGGATTTCTTTCTCAATTGGTTCAGGAGAAGCCCA
EST: gi|192304065|gb|FG993895.1|FG993895
EST:     CCCTGTGAAACTTTTGCCTAAAGAGAAACTAGTTGATACAAATGGAGCAG                         GAGATGCATTTGTTGGAGGATTTCTTTTTCAATTGGTTCAGGAGAAGCCCA
genomic: CC-TGTGAAACTTTTGCCTAAAGAGAAACTAGTTGATACAAATGGAGCAGgtactgtgct ... gtgtttgtagGAGATGCATTTGTTGGAGGATTTCTTTCTCAATTGGTTCAGGAGAAGCCCA
EST: gi|192329141|gb|FK021128.1|FK021128
EST:     CCCTGTGAAACTTTTGCCTAAAGAGAAACTAGTTGATACAAATGGAGCAG                         GAGATGCATTTGTTGGAGGATTTCTTTCTCAATTGGTTCAGGAGAAGCCCA
genomic: -CCTGTGAAACTTTTGCCTAAAGAGAAACTAGTTGATACAAATGGAGCAGgtactgtgct ... gtgtttgtagGAGATGCATTTGTTGGAGGATTTCTTTCTCAATTGGTTCAGGAGAAGCCCA
EST: gi|6455199|gb|AW185882.1|AW185882
EST:     CCCTGTGAAACTTTTGCCTAAAGAGAAACTAGTTGATACAAATGGAGCAG                         GAGATGCATTTGTTGGAGGATTTCTTTCTCAATTGGTTCAGGAGAAGCCCA
genomic: CC-TGTGAAACTTTTGCCTAAAGAGAAACTAGTTGATACAAATGGAGCAGgtactgtgct ... gtgtttgtagGAGATGCATTTGTTGGAGGATTTCTTTCTCAATTGGTTCAGGAGAAGCCCA
EST: gi|17963328|gb|BM270070.1|BM270070
EST:     CCCTGTGAAACTTTTGCCTAAAGAGAAACTAGTTGATACAAATGGAGCAG                         GAGATGCATTTGTTGGAGGATTTCTTTCTCAATTGGTTCAGGAGAAGCCCA
genomic: -CCTGTGAAACTTTTGCCTAAAGAGAAACTAGTTGATACAAATGGAGCAGgtactgtgct ... gtgtttgtagGAGATGCATTTGTTGGAGGATTTCTTTCTCAATTGGTTCAGGAGAAGCCCA
EST: gi|11689965|gb|BF597641.1|BF597641
EST:     GTTGATACAAATGCAGCAG                         GAGATGCATTTGTTGGAGGATTTCTTTCTCAATTGGTTCAGGAGAACCCCA
genomic: GTTGATACAAATGGAGCAGgtactgtgct ... gtgtttgtagGAGATGCATTTGTTGGAGGATTTCTTTCTCAATTGGTTCAGGAGAAGCCCA
EST: gi|37996713|gb|CF808302.1|CF808302
EST:     CCCTGTGAAACTTTTGCCTAAAGAGAAACTAGTTGATACAAATGGAGCAG                         GAGATGCATTTGTTGGAGGATTTCTTTCTCAATTGGTTCAGGAGAAGCCCA
genomic: CC-TGTGAAACTTTTGCCTAAAGAGAAACTAGTTGATACAAATGGAGCAGgtactgtgct ... gtgtttgtagGAGATGCATTTGTTGGAGGATTTCTTTCTCAATTGGTTCAGGAGAAGCCCA
EST: gi|192329140|gb|FK021127.1|FK021127
EST:     CCCTGTGAAACTTTTGCCTAAAGAGAAACTAGTTGATACAAATGGAGCAG                         GAGATGCATTTGTTGGAGGATTTCTTTCTCAATTGGTT
genomic: CC-TGTGAAACTTTTGCCTAAAGAGAAACTAGTTGATACAAATGGAGCAGgtactgtgct ... gtgtttgtagGAGATGCATTTGTTGGAGGATTTCTTTCTCAATTGGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACAGGGTGCGGATCCTATTTGTGTTGCTGAGGATGGGAAGGTGAAAAAGTTCCTGTGAAACTTTTGCCTAAAGAGAAACTAGTTGATACAAATGGAGCAGgtactgtgctacttcttttaggagttgaaatgtggaacttgcatatataattattatgtatttatgttcataaaagttatctatcttgtactggtctttc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG