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...tggggcacagccaggatttcataaatagacggtggtagtgacaagcaagatgctgctgattttgtttcatgtttcatcccttattgttttgtgtttgtagGAGATGCATTTGTTGGAGGATTTCTTTCTCAATTGGTTCAGGAGAAGCCCATTGAAGAATGTGTGAGAGCTGGCTGTTATGCAGCAAATGTTATCATCCA
species | Glycine max |
transcript | GLYMA19G36630.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CCCTGTGAAACTTTTGCCTAAAGAGAAACTAGTTGATACAAATGGAGCAG GAGATGCATTTGTTGGAGGATTTCTTTCTCAATTGGTTCAGGAGAAGCCCAEST: gi|192304065|gb|FG993895.1|FG993895
genomic: -CCTGTGAAACTTTTGCCTAAAGAGAAACTAGTTGATACAAATGGAGCAGgtactgtgct ... gtgtttgtagGAGATGCATTTGTTGGAGGATTTCTTTCTCAATTGGTTCAGGAGAAGCCCA
EST: CCCTGTGAAACTTTTGCCTAAAGAGAAACTAGTTGATACAAATGGAGCAG GAGATGCATTTGTTGGAGGATTTCTTTTTCAATTGGTTCAGGAGAAGCCCAEST: gi|192329141|gb|FK021128.1|FK021128
genomic: CC-TGTGAAACTTTTGCCTAAAGAGAAACTAGTTGATACAAATGGAGCAGgtactgtgct ... gtgtttgtagGAGATGCATTTGTTGGAGGATTTCTTTCTCAATTGGTTCAGGAGAAGCCCA
EST: CCCTGTGAAACTTTTGCCTAAAGAGAAACTAGTTGATACAAATGGAGCAG GAGATGCATTTGTTGGAGGATTTCTTTCTCAATTGGTTCAGGAGAAGCCCAEST: gi|6455199|gb|AW185882.1|AW185882
genomic: -CCTGTGAAACTTTTGCCTAAAGAGAAACTAGTTGATACAAATGGAGCAGgtactgtgct ... gtgtttgtagGAGATGCATTTGTTGGAGGATTTCTTTCTCAATTGGTTCAGGAGAAGCCCA
EST: CCCTGTGAAACTTTTGCCTAAAGAGAAACTAGTTGATACAAATGGAGCAG GAGATGCATTTGTTGGAGGATTTCTTTCTCAATTGGTTCAGGAGAAGCCCAEST: gi|17963328|gb|BM270070.1|BM270070
genomic: CC-TGTGAAACTTTTGCCTAAAGAGAAACTAGTTGATACAAATGGAGCAGgtactgtgct ... gtgtttgtagGAGATGCATTTGTTGGAGGATTTCTTTCTCAATTGGTTCAGGAGAAGCCCA
EST: CCCTGTGAAACTTTTGCCTAAAGAGAAACTAGTTGATACAAATGGAGCAG GAGATGCATTTGTTGGAGGATTTCTTTCTCAATTGGTTCAGGAGAAGCCCAEST: gi|11689965|gb|BF597641.1|BF597641
genomic: -CCTGTGAAACTTTTGCCTAAAGAGAAACTAGTTGATACAAATGGAGCAGgtactgtgct ... gtgtttgtagGAGATGCATTTGTTGGAGGATTTCTTTCTCAATTGGTTCAGGAGAAGCCCA
EST: GTTGATACAAATGCAGCAG GAGATGCATTTGTTGGAGGATTTCTTTCTCAATTGGTTCAGGAGAACCCCAEST: gi|37996713|gb|CF808302.1|CF808302
genomic: GTTGATACAAATGGAGCAGgtactgtgct ... gtgtttgtagGAGATGCATTTGTTGGAGGATTTCTTTCTCAATTGGTTCAGGAGAAGCCCA
EST: CCCTGTGAAACTTTTGCCTAAAGAGAAACTAGTTGATACAAATGGAGCAG GAGATGCATTTGTTGGAGGATTTCTTTCTCAATTGGTTCAGGAGAAGCCCAEST: gi|192329140|gb|FK021127.1|FK021127
genomic: CC-TGTGAAACTTTTGCCTAAAGAGAAACTAGTTGATACAAATGGAGCAGgtactgtgct ... gtgtttgtagGAGATGCATTTGTTGGAGGATTTCTTTCTCAATTGGTTCAGGAGAAGCCCA
EST: CCCTGTGAAACTTTTGCCTAAAGAGAAACTAGTTGATACAAATGGAGCAG GAGATGCATTTGTTGGAGGATTTCTTTCTCAATTGGTT
genomic: CC-TGTGAAACTTTTGCCTAAAGAGAAACTAGTTGATACAAATGGAGCAGgtactgtgct ... gtgtttgtagGAGATGCATTTGTTGGAGGATTTCTTTCTCAATTGGTT
caagatgctgctgattttgtttcatgtttcatcccttattgttttgtgtttgtagGAGATGCATTTGTTGGAGGATTTCTTTCTCAATTGGTTCAGGAGAAGCCCATTGAAGAATGTGTGAGAGCTGGCTGTTATGCAGCAAATGTTATCATCCA
tgctgat putative branch site (score: 3)
ttattgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggggcacagccaggatttcataaatagacggtggtagtgacaagcaagatgctgctgattttgtttcatgtttcatcccttattgttttgtgtttgtagGAGATGCATTTGTTGGAGGATTTCTTTCTCAATTGGTTCAGGAGAAGCCCATTGAAGAATGTGTGAGAGCTGGCTGTTATGCAGCAAATGTTATCATCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - -cacagcc
- - - - - - - - - - - - - - - - -ggtagtg
- - - - - - - - - - - - - - - - - - - - acaagca
- - - - - - - - - - - - - - - - - - - - - - - - -atgctgc