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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaacaacattcacatacctcacaagattgagtttgcatgattgtcattgatttctgcaattctacgtattctctttgccactatgttgaacttctacacttttactttgcag

Basic information

species Glycine max
transcript GLYMA19G36080.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58023997|gb|CX710738.1|CX710738
EST:     CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTG                         GCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
genomic: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
EST: gi|207699258|gb|GD680320.1|GD680320
EST:     AAGAGCTGATCCAAAGGAAATCGTTGATTCTTT-CAAGAAACGTTTTT-G                         GCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
genomic: AAGAGCTGATCCAAAGGAAATCGTTGAT-CTTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
EST: gi|254332641|gb|GR844011.1|GR844011
EST:     CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTG                         GCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
genomic: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
EST: gi|192312967|gb|FK003633.1|FK003633
EST:     CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTG                         GCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
genomic: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
EST: gi|214008144|gb|DB987049.1|DB987049
EST:     CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTG                         GCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
genomic: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
EST: gi|17021919|gb|BM092953.1|BM092953
EST:     CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTG                         GCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
genomic: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
EST: gi|208330925|gb|GE128096.1|GE128096
EST:     AAATCGTTGATC-TTTCAAGAAACGTTTTTTG                         GCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
genomic: AAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
EST: gi|12689917|gb|BG156253.1|BG156253
EST:     CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTG                         GCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
genomic: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
EST: gi|151412174|gb|EV281986.1|EV281986
EST:     CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTG                         GCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
genomic: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
EST: gi|254313549|gb|GR831178.1|GR831178
EST:     CA-GAGCTGATCCAAAGGAA-TCGTTGATCTTTTCA-GAA-CGTTTTTTG                         -CTCA-CAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTA
genomic: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTA
EST: gi|192318324|gb|FK011008.1|FK011008
EST:     CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTG                         GCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
genomic: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
EST: gi|192326240|gb|FK015832.1|FK015832
EST:     CAAGAACTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTG                         GCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
genomic: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
EST: gi|193681564|gb|FK623314.1|FK623314
EST:     CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTG                         GCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
genomic: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
EST: gi|214005741|gb|DB990139.1|DB990139
EST:     CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTG                         GCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
genomic: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
EST: gi|208338492|gb|GE135678.1|GE135678
EST:     AAATCGTTGATCTTTTTCAAGAAACGTTTTTTG                         GCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
genomic: AAATCGTTGATC-TTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
EST: gi|37995424|gb|CF807013.1|CF807013
EST:     CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTG                         GCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
genomic: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
EST: gi|209701115|gb|BW652643.1|BW652643
EST:     CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTG                         GCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
genomic: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
EST: gi|254332640|gb|GR844010.1|GR844010
EST:     CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTG                         GCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
genomic: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
EST: gi|192318325|gb|FK011009.1|FK011009
EST:     CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTG                         GCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
genomic: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
EST: gi|151406211|gb|EV276026.1|EV276026
EST:     CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTG                         GCTCAACAGTGAAA-TTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
genomic: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
EST: gi|58024173|gb|CX710914.1|CX710914
EST:     CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTG                         GCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
genomic: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
EST: gi|213602694|gb|DB978109.1|DB978109
EST:     CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTG                         GCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
genomic: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
EST: gi|10254921|gb|BE822687.1|BE822687
EST:     CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTG                         GCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG
genomic: CAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaa ... tactttgcagGCTCAACAGTGAAAATTTGGTTGCAGTGGGTATCCTCTAAGTTGTAGATTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAAATCGTTGATCTTTTCAAGAAACGTTTTTTGgtactgtaaacaacattcacatacctcacaagattgagtttgcatgattgtcattgatttctgcaattctacgtattctctttgccactatgttgaacttctacacttttactttgcag

- - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA