Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACATTCACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggttttaggtttatagatggaggaaagtggtgttcgagtagttatggaattaactttcagaattggtgattttaatcag

Basic information

species Glycine max
transcript GLYMA19G36080.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19270375|gb|BM886631.1|BM886631
EST:     CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: gi|58023997|gb|CX710738.1|CX710738
EST:     CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: gi|19270064|gb|BM886320.1|BM886320
EST:     CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: gi|213594334|gb|DB969984.1|DB969984
EST:     CACCACAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGG
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: gi|254332641|gb|GR844011.1|GR844011
EST:     CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: gi|192312967|gb|FK003633.1|FK003633
EST:     CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: gi|207782854|gb|GD752409.1|GD752409
EST:     CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: gi|213590581|gb|DB973326.1|DB973326
EST:     CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: gi|17021919|gb|BM092953.1|BM092953
EST:     CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: gi|13252020|gb|BG362914.1|BG362914
EST:     CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTACAGAATGCTCTTGGTAAATTTGCTGATGGGC
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: gi|6071286|gb|AW100673.1|AW100673
EST:     CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: gi|12689917|gb|BG156253.1|BG156253
EST:     CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: gi|151412174|gb|EV281986.1|EV281986
EST:     CACCAAAGAGCTGTATCCTGCATTGAAAGGAGATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: gi|254313549|gb|GR831178.1|GR831178
EST:     CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: gi|192318324|gb|FK011008.1|FK011008
EST:     CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: gi|208317705|gb|GE112370.1|GE112370
EST:     CCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
genomic: CCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: gi|192326240|gb|FK015832.1|FK015832
EST:     CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: gi|7234135|gb|AW569475.1|AW569475
EST:     CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTATAGAATGCTCTTGGTAAATTTGGTGATGGGC
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: gi|6666516|gb|AW277910.1|AW277910
EST:     CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: gi|213600537|gb|DB960085.1|DB960085
EST:     CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: gi|10238202|gb|BE807090.1|BE807090
EST:     CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: gi|209727125|gb|BW663267.1|BW663267
EST:     CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: gi|254332640|gb|GR844010.1|GR844010
EST:     CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: gi|192318325|gb|FK011009.1|FK011009
EST:     CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: gi|9204038|gb|BE330262.1|BE330262
EST:     CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: gi|151406211|gb|EV276026.1|EV276026
EST:     CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: gi|209701114|gb|BW652642.1|BW652642
EST:     CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: gi|58024173|gb|CX710914.1|CX710914
EST:     CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: gi|19452928|gb|BM954338.1|BM954338
EST:     CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: gi|213602694|gb|DB978109.1|DB978109
EST:     ATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
genomic: ATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: gi|19934788|gb|BQ079818.1|BQ079818
EST:     CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
EST: gi|298180090|gb|HO025305.1|HO025305
EST:     CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCG                         GTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC
genomic: CACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggtttt ... ttttaatcagGTCCTGCCTTTGATTACTTAGAGAATGCTCTTGGTAAATTTGGTGATGGGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACATTCACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAGCCGgtaaggttttaggtttatagatggaggaaagtggtgttcgagtagttatggaattaactttcagaattggtgattttaatcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC