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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTATGTTCCATTTGTTGAAAGATTCCAGCTCGTCTTTGCTGATGTGTTCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAGgtaaattagaagcagttctatgtaaattattttctggttcgaagaaattatactgctttatattcttttatgtaatgaattgattgcgaatcataaccat...

Basic information

species Glycine max
transcript GLYMA19G36080.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58023997|gb|CX710738.1|CX710738
EST:     TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAG                         GAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
genomic: TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAGgtaaattaga ... tcttttgcagGAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
EST: gi|207699258|gb|GD680320.1|GD680320
EST:     TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAG                         GAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
genomic: TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAGgtaaattaga ... tcttttgcagGAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
EST: gi|254332641|gb|GR844011.1|GR844011
EST:     TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAG                         GAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
genomic: TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAGgtaaattaga ... tcttttgcagGAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
EST: gi|192312967|gb|FK003633.1|FK003633
EST:     TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAG                         GAAGTGAACAAGATTAGTGCCTATACACAGACAAGAGCTGATCCAAAGGAA
genomic: TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAGgtaaattaga ... tcttttgcagGAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
EST: gi|193464057|gb|FK427897.1|FK427897
EST:     TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAG                         GAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
genomic: TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAGgtaaattaga ... tcttttgcagGAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
EST: gi|193646933|gb|FK593070.1|FK593070
EST:     CAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAAACATGGATTGAG                         GAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
genomic: CAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAA-CATGGATTGAGgtaaattaga ... tcttttgcagGAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
EST: gi|214008144|gb|DB987049.1|DB987049
EST:     TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAG                         GAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
genomic: TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAGgtaaattaga ... tcttttgcagGAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
EST: gi|17021919|gb|BM092953.1|BM092953
EST:     TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAG                         GAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
genomic: TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAGgtaaattaga ... tcttttgcagGAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
EST: gi|6071286|gb|AW100673.1|AW100673
EST:     TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAG                         GAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
genomic: TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAGgtaaattaga ... tcttttgcagGAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
EST: gi|12689917|gb|BG156253.1|BG156253
EST:     TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAG                         GAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
genomic: TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAGgtaaattaga ... tcttttgcagGAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
EST: gi|151412174|gb|EV281986.1|EV281986
EST:     TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAG                         GAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
genomic: TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAGgtaaattaga ... tcttttgcagGAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
EST: gi|207691432|gb|GD675737.1|GD675737
EST:     TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAG                         GAAGTGAACAAGATTAGTGCTTATACACA
genomic: TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAGgtaaattaga ... tcttttgcagGAAGTGAACAAGATTAGTGCTTATACACA
EST: gi|254313549|gb|GR831178.1|GR831178
EST:     TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAG                         GAAGTGAACAAGATTAGTGCTTATACACAGACA-GAGCTGATCCAAAGGAA
genomic: TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAGgtaaattaga ... tcttttgcagGAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
EST: gi|192318324|gb|FK011008.1|FK011008
EST:     TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAG                         GAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
genomic: TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAGgtaaattaga ... tcttttgcagGAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
EST: gi|192326240|gb|FK015832.1|FK015832
EST:     TCAAGCATGATATAACTGAAGGAAGACCTAGACTTGCAACATGGATTGAG                         GAAGTGAACAAGATTAGTGCTTATACACAGACAAGAACTGATCCAAAGGAA
genomic: TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAGgtaaattaga ... tcttttgcagGAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
EST: gi|193678572|gb|FK615364.1|FK615364
EST:     TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAG                         GAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
genomic: TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAGgtaaattaga ... tcttttgcagGAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
EST: gi|193681564|gb|FK623314.1|FK623314
EST:     TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAG                         GAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
genomic: TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAGgtaaattaga ... tcttttgcagGAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
EST: gi|214005741|gb|DB990139.1|DB990139
EST:     TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAG                         GAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
genomic: TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAGgtaaattaga ... tcttttgcagGAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
EST: gi|6666516|gb|AW277910.1|AW277910
EST:     TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAG                         GAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCACAGGAA
genomic: TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAGgtaaattaga ... tcttttgcagGAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
EST: gi|10238202|gb|BE807090.1|BE807090
EST:     TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAG                         GAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
genomic: TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAGgtaaattaga ... tcttttgcagGAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
EST: gi|37995424|gb|CF807013.1|CF807013
EST:     TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAG                         GAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
genomic: TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAGgtaaattaga ... tcttttgcagGAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
EST: gi|209701115|gb|BW652643.1|BW652643
EST:     TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAG                         GAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
genomic: TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAGgtaaattaga ... tcttttgcagGAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
EST: gi|254332640|gb|GR844010.1|GR844010
EST:     TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAG                         GAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
genomic: TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAGgtaaattaga ... tcttttgcagGAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
EST: gi|192318325|gb|FK011009.1|FK011009
EST:     TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAG                         GAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
genomic: TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAGgtaaattaga ... tcttttgcagGAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
EST: gi|151406211|gb|EV276026.1|EV276026
EST:     TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAG                         GAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
genomic: TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAGgtaaattaga ... tcttttgcagGAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
EST: gi|58024173|gb|CX710914.1|CX710914
EST:     TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAG                         GAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
genomic: TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAGgtaaattaga ... tcttttgcagGAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
EST: gi|213602694|gb|DB978109.1|DB978109
EST:     TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAG                         GAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
genomic: TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAGgtaaattaga ... tcttttgcagGAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
EST: gi|10254921|gb|BE822687.1|BE822687
EST:     TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAG                         GAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA
genomic: TCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAGgtaaattaga ... tcttttgcagGAAGTGAACAAGATTAGTGCTTATACACAGACAAGAGCTGATCCAAAGGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGCTTATGTTCCATTTGTTGAAAGATTCCAGCTCGTCTTTGCTGATGTGTTCAAGCATGATATAACTGAAGGAAGACCTAAACTTGCAACATGGATTGAGgtaaattagaagcagttctatgtaaattattttctggttcgaagaaattatactgctttatattcttttatgtaatgaattgattgcgaatcataaccat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA