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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaactgcacattcttcctcacatttctatttttttttcagtggtggtgttttcagaagaggttttttttttttttccagGATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACATTCACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAG

Basic information

species Glycine max
transcript GLYMA19G36080.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298171848|gb|HO021440.1|HO021440
EST:     TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGT                         GATCCTGCCAAGAAAG
genomic: TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGTgtaagaactg ... ttttttccagGATCCTGCCAAGAAAG
EST: gi|298186201|gb|HO036834.1|HO036834
EST:     TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGT                         GATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
genomic: TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGTgtaagaactg ... ttttttccagGATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
EST: gi|19270375|gb|BM886631.1|BM886631
EST:     TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGT                         GATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
genomic: TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGTgtaagaactg ... ttttttccagGATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
EST: gi|58023997|gb|CX710738.1|CX710738
EST:     TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGT                         GATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
genomic: TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGTgtaagaactg ... ttttttccagGATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
EST: gi|19270064|gb|BM886320.1|BM886320
EST:     TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGT                         GATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
genomic: TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGTgtaagaactg ... ttttttccagGATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
EST: gi|213594334|gb|DB969984.1|DB969984
EST:     TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGT                         GATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
genomic: TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGTgtaagaactg ... ttttttccagGATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
EST: gi|254332641|gb|GR844011.1|GR844011
EST:     ACTTTGAAGGGCCGTCTCTAGTTCCCAGT                         GATCCTGCCAAGAAAGAGTTT-GTGA-GAGTTGATTTCCCATGTTGATACA
genomic: ACTTTGAAGGGCCGTCTCTAGTTCCCAGTgtaagaactg ... ttttttccagGATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
EST: gi|192312967|gb|FK003633.1|FK003633
EST:     GGGCCGTCTCTAGTTCCCAGT                         GATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
genomic: GGGCCGTCTCTAGTTCCCAGTgtaagaactg ... ttttttccagGATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
EST: gi|207782854|gb|GD752409.1|GD752409
EST:     TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGT                         GATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
genomic: TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGTgtaagaactg ... ttttttccagGATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
EST: gi|213590581|gb|DB973326.1|DB973326
EST:     TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGT                         GATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
genomic: TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGTgtaagaactg ... ttttttccagGATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
EST: gi|17021919|gb|BM092953.1|BM092953
EST:     TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGT                         GATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
genomic: TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGTgtaagaactg ... ttttttccagGATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
EST: gi|13252020|gb|BG362914.1|BG362914
EST:     TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGT                         GATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
genomic: TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGTgtaagaactg ... ttttttccagGATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
EST: gi|6071286|gb|AW100673.1|AW100673
EST:     TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGT                         GATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
genomic: TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGTgtaagaactg ... ttttttccagGATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
EST: gi|151412174|gb|EV281986.1|EV281986
EST:     TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGT                         GATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
genomic: TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGTgtaagaactg ... ttttttccagGATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
EST: gi|254313549|gb|GR831178.1|GR831178
EST:     TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGT                         GATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
genomic: TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGTgtaagaactg ... ttttttccagGATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
EST: gi|192318324|gb|FK011008.1|FK011008
EST:     TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGT                         GATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
genomic: TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGTgtaagaactg ... ttttttccagGATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
EST: gi|192326240|gb|FK015832.1|FK015832
EST:     TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGT                         GATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
genomic: TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGTgtaagaactg ... ttttttccagGATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
EST: gi|7234135|gb|AW569475.1|AW569475
EST:     TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGT                         GATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
genomic: TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGTgtaagaactg ... ttttttccagGATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
EST: gi|6666516|gb|AW277910.1|AW277910
EST:     TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGT                         GATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
genomic: TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGTgtaagaactg ... ttttttccagGATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
EST: gi|213600537|gb|DB960085.1|DB960085
EST:     TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGT                         GATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
genomic: TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGTgtaagaactg ... ttttttccagGATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
EST: gi|10238202|gb|BE807090.1|BE807090
EST:     TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGT                         GATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
genomic: TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGTgtaagaactg ... ttttttccagGATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
EST: gi|209727125|gb|BW663267.1|BW663267
EST:     TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGT                         GATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
genomic: TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGTgtaagaactg ... ttttttccagGATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
EST: gi|254332640|gb|GR844010.1|GR844010
EST:     TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGT                         GATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
genomic: TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGTgtaagaactg ... ttttttccagGATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
EST: gi|192318325|gb|FK011009.1|FK011009
EST:     TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGT                         GATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
genomic: TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGTgtaagaactg ... ttttttccagGATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
EST: gi|9204038|gb|BE330262.1|BE330262
EST:     TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGT                         GATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
genomic: TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGTgtaagaactg ... ttttttccagGATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
EST: gi|151406211|gb|EV276026.1|EV276026
EST:     TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGT                         GATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
genomic: TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGTgtaagaactg ... ttttttccagGATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
EST: gi|209701114|gb|BW652642.1|BW652642
EST:     TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGT                         GATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
genomic: TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGTgtaagaactg ... ttttttccagGATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
EST: gi|58024173|gb|CX710914.1|CX710914
EST:     TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGT                         GATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
genomic: TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGTgtaagaactg ... ttttttccagGATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
EST: gi|193329622|gb|FK293626.1|FK293626
EST:     TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGT                         GATCCTGCCAAGAAAGAGTTCGGTGAGGAGTTGATTTCCCATGTTGATA
genomic: TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGTgtaagaactg ... ttttttccagGATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATA
EST: gi|19452928|gb|BM954338.1|BM954338
EST:     TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGT                         GATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
genomic: TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGTgtaagaactg ... ttttttccagGATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
EST: gi|19934788|gb|BQ079818.1|BQ079818
EST:     TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGT                         GATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
genomic: TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGTgtaagaactg ... ttttttccagGATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
EST: gi|298180090|gb|HO025305.1|HO025305
EST:     TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGT                         GATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA
genomic: TGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGTgtaagaactg ... ttttttccagGATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctatttttttttcagtggtggtgttttcagaagaggttttttttttttttccagGATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACATTCACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAG
                                     ttttttttttttttcc  CT-rich tract
                                  aggttttttttttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagaactgcacattcttcctcacatttctatttttttttcagtggtggtgttttcagaagaggttttttttttttttccagGATCCTGCCAAGAAAGAGTTTGGTGAGGAGTTGATTTCCCATGTTGATACATTCACCAAAGAGCTGTATTCTGCATTGAAAGGAGATCCAATACATCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC