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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtttaacttgctgattgaggaaaataaattagtttatgatcatgtaattgatcataactttcttcttatgttatagGTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGT

Basic information

species Glycine max
transcript GLYMA19G36080.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298171848|gb|HO021440.1|HO021440
EST:     TACAAAACAGGCCTGCTTGGTTTAAGGAGAAAGTCTACCCTGAAAACAAG                         GTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
genomic: TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAGgtgtttaact ... tatgttatagGTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
EST: gi|298186201|gb|HO036834.1|HO036834
EST:     TACAAAACAAGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAG                         GTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
genomic: TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAGgtgtttaact ... tatgttatagGTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
EST: gi|19270375|gb|BM886631.1|BM886631
EST:     TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAG                         GTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
genomic: TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAGgtgtttaact ... tatgttatagGTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
EST: gi|58023997|gb|CX710738.1|CX710738
EST:     TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAG                         GTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
genomic: TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAGgtgtttaact ... tatgttatagGTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
EST: gi|19270064|gb|BM886320.1|BM886320
EST:     TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAG                         GTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
genomic: TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAGgtgtttaact ... tatgttatagGTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
EST: gi|213594334|gb|DB969984.1|DB969984
EST:     TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAG                         GTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
genomic: TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAGgtgtttaact ... tatgttatagGTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
EST: gi|213590581|gb|DB973326.1|DB973326
EST:     TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAGCAAG                         GTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
genomic: TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAGgtgtttaact ... tatgttatagGTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
EST: gi|17021919|gb|BM092953.1|BM092953
EST:     CTGAAAACAAG                         GTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
genomic: CTGAAAACAAGgtgtttaact ... tatgttatagGTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
EST: gi|13252020|gb|BG362914.1|BG362914
EST:     TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAG                         GTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
genomic: TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAGgtgtttaact ... tatgttatagGTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
EST: gi|6071286|gb|AW100673.1|AW100673
EST:     GCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAG                         GTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
genomic: GCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAGgtgtttaact ... tatgttatagGTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
EST: gi|151412174|gb|EV281986.1|EV281986
EST:     TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAG                         GTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
genomic: TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAGgtgtttaact ... tatgttatagGTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
EST: gi|254313549|gb|GR831178.1|GR831178
EST:     TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAG                         GTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
genomic: TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAGgtgtttaact ... tatgttatagGTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
EST: gi|192318324|gb|FK011008.1|FK011008
EST:     TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAG                         GTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
genomic: TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAGgtgtttaact ... tatgttatagGTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
EST: gi|192326240|gb|FK015832.1|FK015832
EST:     TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAG                         GTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
genomic: TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAGgtgtttaact ... tatgttatagGTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
EST: gi|6666516|gb|AW277910.1|AW277910
EST:     TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAG                         GTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
genomic: TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAGgtgtttaact ... tatgttatagGTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
EST: gi|213600537|gb|DB960085.1|DB960085
EST:     TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAG                         GTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
genomic: TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAGgtgtttaact ... tatgttatagGTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
EST: gi|209727125|gb|BW663267.1|BW663267
EST:     TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAG                         GTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
genomic: TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAGgtgtttaact ... tatgttatagGTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
EST: gi|254332640|gb|GR844010.1|GR844010
EST:     TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAG                         GTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
genomic: TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAGgtgtttaact ... tatgttatagGTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
EST: gi|192318325|gb|FK011009.1|FK011009
EST:     TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAG                         GTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
genomic: TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAGgtgtttaact ... tatgttatagGTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
EST: gi|9204038|gb|BE330262.1|BE330262
EST:     TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAG                         GTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
genomic: TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAGgtgtttaact ... tatgttatagGTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
EST: gi|151406211|gb|EV276026.1|EV276026
EST:     TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAG                         GTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
genomic: TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAGgtgtttaact ... tatgttatagGTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
EST: gi|209701114|gb|BW652642.1|BW652642
EST:     TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAG                         GTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
genomic: TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAGgtgtttaact ... tatgttatagGTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
EST: gi|58024173|gb|CX710914.1|CX710914
EST:     TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAG                         GTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
genomic: TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAGgtgtttaact ... tatgttatagGTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
EST: gi|207823570|gb|GD794147.1|GD794147
EST:     TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAG                         GTGCCATCATTGGAGCACAATGGAAAG
genomic: TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAGgtgtttaact ... tatgttatagGTGCCATCATTGGAGCACAATGGAAAG
EST: gi|193329622|gb|FK293626.1|FK293626
EST:     TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAG                         GTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
genomic: TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAGgtgtttaact ... tatgttatagGTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
EST: gi|19452928|gb|BM954338.1|BM954338
EST:     TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAG                         GTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
genomic: TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAGgtgtttaact ... tatgttatagGTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
EST: gi|19934788|gb|BQ079818.1|BQ079818
EST:     TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAG                         GTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
genomic: TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAGgtgtttaact ... tatgttatagGTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
EST: gi|298180090|gb|HO025305.1|HO025305
EST:     TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAG                         GTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG
genomic: TACAAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAGgtgtttaact ... tatgttatagGTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaataaattagtttatgatcatgtaattgatcataactttcttcttatgttatagGTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGT
                              tcataac  putative branch site (score: 2)
                                    ctttcttcttatgtt  CT-rich tract
     aattagtttatgat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgtttaacttgctgattgaggaaaataaattagtttatgatcatgtaattgatcataactttcttcttatgttatagGTGCCATCATTGGAGCACAATGGAAAGGTCTTGGGTGAAAGTCTCGATTTGGTCAAATACATAGATGACAACTTTGAAGGGCCGTCTCTAGTTCCCAGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG