1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ggtatgaattctttttagacacttgtcctagtgtcctactcacaataaaactccaattgatagtttcctccttttggtgtctgtaatttttgctgtcactatacatgttatgctacttactgctgcttatttggaaccggtacaGGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGGCTGAAGAGGAGGAGTAAGTGTGGTGGAGGTTCAGGGCTGAAGAAATTAC
species | Glycine max |
transcript | GLYMA18G47780.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCA GGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGGEST: gi|10238380|gb|BE807268.1|BE807268
genomic: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCAggtatgaatt ... aaccggtacaGGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGG
EST: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCA GGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGGEST: gi|14990170|gb|BI315843.1|BI315843
genomic: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCAggtatgaatt ... aaccggtacaGGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGG
EST: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCA GGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGGEST: gi|151401127|gb|EV270941.1|EV270941
genomic: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCAggtatgaatt ... aaccggtacaGGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGG
EST: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCA GGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGGEST: gi|10846257|gb|BF071303.1|BF071303
genomic: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCAggtatgaatt ... aaccggtacaGGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGG
EST: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCA GGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGGEST: gi|26059859|gb|CA802773.1|CA802773
genomic: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCAggtatgaatt ... aaccggtacaGGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGG
EST: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCA GGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGGEST: gi|7145712|gb|AW507634.1|AW507634
genomic: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCAggtatgaatt ... aaccggtacaGGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGG
EST: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCA GEST: gi|7145712|gb|AW507634.1|AW507634
genomic: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCAggtatgaatt ... aaccggtaca-
EST: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCA GEST: gi|10236632|gb|BE805520.1|BE805520
genomic: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCAggtatgaatt ... aaccggtaca-
EST: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCA GGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGGEST: gi|19347148|gb|BM892028.1|BM892028
genomic: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCAggtatgaatt ... aaccggtacaGGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGG
EST: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCA GGCAAACCTTTEST: gi|31456738|gb|CD398766.1|CD398766
genomic: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCAggtatgaatt ... aaccggtacaGGCAAACCTTT
EST: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCA GGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGGEST: gi|27426423|gb|CA937943.1|CA937943
genomic: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCAggtatgaatt ... aaccggtacaGGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGG
EST: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCA GGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGGEST: gi|10234110|gb|BE802998.1|BE802998
genomic: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCAggtatgaatt ... aaccggtacaGGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGG
EST: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCA GGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGGEST: gi|21285387|gb|BQ473258.1|BQ473258
genomic: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCAggtatgaatt ... aaccggtacaGGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGG
EST: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCA GGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGGEST: gi|192327754|gb|FK022383.1|FK022383
genomic: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCAggtatgaatt ... aaccggtacaGGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGG
EST: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCA GGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGGEST: gi|192322177|gb|FK014073.1|FK014073
genomic: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCAggtatgaatt ... aaccggtacaGGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGG
EST: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCA GGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGGEST: gi|192322176|gb|FK014072.1|FK014072
genomic: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCAggtatgaatt ... aaccggtacaGGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGG
EST: TGAAGATACCATTTTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCA GGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGGEST: gi|18734887|gb|BM528442.1|BM528442
genomic: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCAggtatgaatt ... aaccggtacaGGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGG
EST: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCA GGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGGEST: gi|14125325|gb|BG789763.1|BG789763
genomic: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCAggtatgaatt ... aaccggtacaGGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGG
EST: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCA GGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGGEST: gi|6726368|gb|AW310722.1|AW310722
genomic: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCAggtatgaatt ... aaccggtacaGGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGG
EST: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCA GGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGGEST: gi|22927121|gb|BU544260.1|BU544260
genomic: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCAggtatgaatt ... aaccggtacaGGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGG
EST: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCA GGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGGEST: gi|16283103|gb|BI945373.1|BI945373
genomic: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCAggtatgaatt ... aaccggtacaGGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGG
EST: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCA GGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGGEST: gi|209707158|gb|BW656775.1|BW656775
genomic: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCAggtatgaatt ... aaccggtacaGGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGG
EST: GTTCCGAAAAGGAACAAACTCCAAGGGCA GGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGGEST: gi|19934532|gb|BQ079562.1|BQ079562
genomic: GTTCCGAAAAGGAACAAACTCCAAGGGCAggtatgaatt ... aaccggtacaGGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGG
EST: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCA GGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGGEST: gi|209724857|gb|BW672640.1|BW672640
genomic: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCAggtatgaatt ... aaccggtacaGGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGG
EST: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCA GGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGGEST: gi|120533169|gb|EH261302.1|EH261302
genomic: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCAggtatgaatt ... aaccggtacaGGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGG
EST: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCA GGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGGEST: gi|254321640|gb|GR824957.1|GR824957
genomic: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCAggtatgaatt ... aaccggtacaGGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGG
EST: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCA GGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGGEST: gi|15337352|gb|BI498008.1|BI498008
genomic: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCAggtatgaatt ... aaccggtacaGGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGG
EST: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCA GGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGGEST: gi|213601595|gb|DB980866.1|DB980866
genomic: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCAggtatgaatt ... aaccggtacaGGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGG
EST: TGAAGATACCAAACTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCA GGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGGEST: gi|18730241|gb|BM525765.1|BM525765
genomic: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCAggtatgaatt ... aaccggtacaGGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGG
EST: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCA GGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGG
genomic: TGAAGATACCATTCTTCATTGGTTCCGAAAAGGAACAAACTCCAAGGGCAggtatgaatt ... aaccggtacaGGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGG
ttgctgtcactatacatgttatgctacttactgctgcttatttggaaccggtacaGGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGGCTGAAGAGGAGGAGTAAGTGTGGTGGAGGTTCAGGGCTGAAGAAATTAC
tacttac putative branch site (score: 1)
ttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtatgaattctttttagacacttgtcctagtgtcctactcacaataaaactccaattgatagtttcctccttttggtgtctgtaatttttgctgtcactatacatgttatgctacttactgctgcttatttggaaccggtacaGGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGGCTGAAGAGGAGGAGTAAGTGTGGTGGAGGTTCAGGGCTGAAGAAATTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA