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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGAggcaagcttcctaaaccagcagaaaacctttattttatcattgttgatttcagtgtcattttcttattgttgatttcagtgccatgggttttcaatgagc...

Basic information

species Glycine max
transcript GLYMA18G47780.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G47780.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G012416_T04 (Zea mays), 5'ss of exon 4
GGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGAggcaagcttcctaaaccagcagaaaacctttattttatcattgttgatttcagtgtcattttcttattgttgatttcagtgccatggg----ttttcaatgagc-
 |||||| | || || ||||| || ||||||||||| ||||| ||| | |||||||||||||||||||||| |   |   |  | ||  | | | |||  | ||  |||||   | | ||||| |  |  | || |||    ||| |||    |  |     ||||||   || 
-GAACTTGTCGCCAAAAGTATCGAGTCTTCAGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacagtcagtggaacaatatataccctgaaattc-tcatt--cgttctcagtat-gtaattttgttgactgttttagttttttttgacccctttcaagttgca

upper sequence: GLYMA18G47780.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM5G877316_T02 (Zea mays), 5'ss of exon 4
GGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGAggca-agcttcctaaaccagcagaaaacctttattttatcattgttgatttcagtgtcattttcttattgttgatttcag-tgccatgggttttcaatga-gc--
 |||||  | || || |||||||| ||||| ||||| ||||| ||| | |||||||||||||||||||||| |  ||      || ||  | | |  ||  | ||  |||||  |  | ||| | |  || | || ||| |  ||| || |   |    | ||  |||  ||  
-GAACTCGTCGCCAAAAGTATTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccagtggaaacaatatatacactgaaattc-tcattcat--tctcaatat-gttgttttgttgcttcttttagcttttactcttgttgtatgttgcaa

upper sequence: GLYMA18G47780.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G36230.1 (Arabidopsis thaliana), 5'ss of exon 4
GGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGAggcaagcttcc---taaaccagcagaaaacctttattttatcattgttgatttcagtgtcatt-------ttcttattgttgatttcagtgccatgggttttcaatgagc
 |||||| |||| || |||||||| || ||||||||||| ||  ||||||| ||||||| ||| |||||||  || || |   |||||     |   || | |  ||  | ||  || ||||     |  ||       || || ||| | |||||  |  ||||  ||| || ||   
-GAACTTGTTGCCAAAAGTATTGAGTCATCAGACCTTAATTTCACAAGATATGGTGACATCTTCTTTGAGgtgagtttacaactaaact--ttgtggacatgttcttggtgatcttttatttggacctttttcaggacctttttcttgcttatttc--tttcatg--tttacattg---

upper sequence: GLYMA18G47780.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv04s0023g00670.t01 (Vitis vinifera), 5'ss of exon 5
GGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGAggcaagcttcctaaaccagcagaaaacctttattttatcat---tgttgatttcagtgtcattttcttatt-gttgatttcagtgccatgg-gttttcaatgagc
 |||||||| ||||| || ||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |           ||||   ||||| | | |      || ||  ||| |   |||  | | |||  |||    |  ||| |||     ||| ||    
-GAACTTATCGCTAAAAGCATTGAATCTTCAGACCTTAACTTCTCTAGATACGGTGACACCTTTTTTGAGgcaagcattgattctttatagaagttctttaatgtcttccgtatgatgtcttctgaagcatgatttcatttattgtggacgttgcaatgataaattccat----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120531863|gb|EH259996.1|EH259996
EST:     ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGA                         GGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
genomic: ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGAggcaagcttc ... cattacttcaGGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
EST: gi|23727845|gb|BU761958.1|BU761958
EST:     ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGA                         GGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
genomic: ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGAggcaagcttc ... cattacttcaGGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
EST: gi|9902134|gb|BE611102.1|BE611102
EST:     CTTTTCAAGATACGGTGACACCTTTTTTGA                         GGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
genomic: CTTTTCAAGATACGGTGACACCTTTTTTGAggcaagcttc ... cattacttcaGGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
EST: gi|21889224|gb|BQ742437.1|BQ742437
EST:     ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGA                         GGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
genomic: ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGAggcaagcttc ... cattacttcaGGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
EST: gi|10233547|gb|BE802435.1|BE802435
EST:     ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGA                         GGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
genomic: ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGAggcaagcttc ... cattacttcaGGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
EST: gi|10709161|gb|BF008885.1|BF008885
EST:     ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGA                         GGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
genomic: ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGAggcaagcttc ... cattacttcaGGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
EST: gi|17963939|gb|BM270682.1|BM270682
EST:     ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGA                         GGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
genomic: ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGAggcaagcttc ... cattacttcaGGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
EST: gi|4292136|gb|AI437719.1|AI437719
EST:     ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGNGACACCTTTTTTGA                         GGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
genomic: ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGAggcaagcttc ... cattacttcaGGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
EST: gi|14126644|gb|BG791082.1|BG791082
EST:     ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGA                         GGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
genomic: ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGAggcaagcttc ... cattacttcaGGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
EST: gi|24135721|gb|BU926231.1|BU926231
EST:     ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGA                         GGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
genomic: ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGAggcaagcttc ... cattacttcaGGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
EST: gi|23730459|gb|BU763318.1|BU763318
EST:     ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGA                         GGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
genomic: ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGAggcaagcttc ... cattacttcaGGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
EST: gi|14125668|gb|BG790106.1|BG790106
EST:     ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGA                         GGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
genomic: ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGAggcaagcttc ... cattacttcaGGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
EST: gi|17518498|gb|BM187540.1|BM187540
EST:     TTTTTATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGA                         GGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
genomic: ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGAggcaagcttc ... cattacttcaGGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
EST: gi|19345855|gb|BM890735.1|BM890735
EST:     ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGA                         GGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
genomic: ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGAggcaagcttc ... cattacttcaGGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
EST: gi|20811794|gb|BQ296272.1|BQ296272
EST:     ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGA                         GGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
genomic: ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGAggcaagcttc ... cattacttcaGGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
EST: gi|151410055|gb|EV279863.1|EV279863
EST:     ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGA                         GGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
genomic: ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGAggcaagcttc ... cattacttcaGGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
EST: gi|18039719|gb|BM308013.1|BM308013
EST:     ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGA                         GGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
genomic: ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGAggcaagcttc ... cattacttcaGGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
EST: gi|11275114|gb|BF325437.1|BF325437
EST:     ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGA                         GGTTGCTTTCACTGGGGGTCGTACACAACCTGTAACTACCAAGCCTGATGA
genomic: ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGAggcaagcttc ... cattacttcaGGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
EST: gi|18041364|gb|BM309658.1|BM309658
EST:     ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGA                         GGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
genomic: ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGAggcaagcttc ... cattacttcaGGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
EST: gi|151394651|gb|EV264522.1|EV264522
EST:     ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGA                         GGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
genomic: ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGAggcaagcttc ... cattacttcaGGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
EST: gi|120494210|gb|EH222377.1|EH222377
EST:     ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGA                         GGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
genomic: ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGAggcaagcttc ... cattacttcaGGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
EST: gi|11413000|gb|BF425020.1|BF425020
EST:     ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGA                         GGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
genomic: ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGAggcaagcttc ... cattacttcaGGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
EST: gi|18041470|gb|BM309764.1|BM309764
EST:     ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGA                         GGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
genomic: ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGAggcaagcttc ... cattacttcaGGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
EST: gi|7795709|gb|AW781106.1|AW781106
EST:     ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGA                         GGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
genomic: ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGAggcaagcttc ... cattacttcaGGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
EST: gi|209702200|gb|BW673232.1|BW673232
EST:     ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGA                         GGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
genomic: ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGAggcaagcttc ... cattacttcaGGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
EST: gi|9987802|gb|BE661910.1|BE661910
EST:     ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGA                         GGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
genomic: ATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGAggcaagcttc ... cattacttcaGGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
EST: gi|16345992|gb|BI971578.1|BI971578
EST:     AATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGA                         GGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA
genomic: AATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGAggcaagcttc ... cattacttcaGGTTGCTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGA