1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttttgtaggctattgcatgtgagcttatattattgtgttatttatcatgtatgtttaatttatgttgtgggcacttatcttttgtttatctccatccccaGTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACCCTGCAGCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGG
species | Glycine max |
transcript | GLYMA18G47780.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGCTCGAAGGAGAGACCCACTCTTG GTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACCEST: gi|23727845|gb|BU761958.1|BU761958
genomic: AGCTCGAAGGAGAGACCCACTCTTGggtaagtttc ... tccatccccaGTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACC
EST: AGCTCGAAGGAGAGACCCACTCTTG GTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACCEST: gi|21889224|gb|BQ742437.1|BQ742437
genomic: AGCTCGAAGGAGAGACCCACTCTTGggtaagtttc ... tccatccccaGTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACC
EST: AGCTCGAAGGAGAGACCCACTCTTG GTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACCEST: gi|10233547|gb|BE802435.1|BE802435
genomic: AGCTCGAAGGAGAGACCCACTCTTGggtaagtttc ... tccatccccaGTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACC
EST: AGCTCGAAGGAGAGACCCACTCTTG GTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACCEST: gi|10709161|gb|BF008885.1|BF008885
genomic: AGCTCGAAGGAGAGACCCACTCTTGggtaagtttc ... tccatccccaGTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACC
EST: AGCTCGAAGGAGAGACCCACTCTTG GTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACCEST: gi|17963939|gb|BM270682.1|BM270682
genomic: AGCTCGAAGGAGAGACCCACTCTTGggtaagtttc ... tccatccccaGTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACC
EST: AGCTCGAAGGAGAGACCCACTCTTG GTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACCEST: gi|4292136|gb|AI437719.1|AI437719
genomic: AGCTCGAAGGAGAGACCCACTCTTGggtaagtttc ... tccatccccaGTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACC
EST: AGCTCGAAGGAGAGACCCACTCTTG GTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACCEST: gi|14126644|gb|BG791082.1|BG791082
genomic: AGCTCGAAGGAGAGACCCACTCTTGggtaagtttc ... tccatccccaGTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACC
EST: AGCTCGAAGGAGAGACCCACTCTTG GTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACCEST: gi|24135721|gb|BU926231.1|BU926231
genomic: AGCTCGAAGGAGAGACCCACTCTTGggtaagtttc ... tccatccccaGTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACC
EST: AGCTCGAAGGAGAGACCCACTCTTG GTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACCEST: gi|14125668|gb|BG790106.1|BG790106
genomic: AGCTCGAAGGAGAGACCCACTCTTGggtaagtttc ... tccatccccaGTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACC
EST: AGCTCGAAGGAGAGACCCACTCTTG GTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACCEST: gi|17518498|gb|BM187540.1|BM187540
genomic: AGCTCGAAGGAGAGACCCACTCTTGggtaagtttc ... tccatccccaGTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACC
EST: AGCTCGAAGGAGAGACCCACTCTTG GTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACCEST: gi|19345855|gb|BM890735.1|BM890735
genomic: AGCTCGAAGGAGAGACCCACTCTTGggtaagtttc ... tccatccccaGTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACC
EST: AGCTCGAAGGAGAGACCCACTCTTG GTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACCEST: gi|20811794|gb|BQ296272.1|BQ296272
genomic: AGCTCGAAGGAGAGACCCACTCTTGggtaagtttc ... tccatccccaGTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACC
EST: AGCTCGAAGGAGAGACCCACTCTTG GTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACCEST: gi|151410055|gb|EV279863.1|EV279863
genomic: AGCTCGAAGGAGAGACCCACTCTTGggtaagtttc ... tccatccccaGTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACC
EST: AGCTCGAAGGAGAGACCCACTCTTG GTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACCEST: gi|18039719|gb|BM308013.1|BM308013
genomic: AGCTCGAAGGAGAGACCCACTCTTGggtaagtttc ... tccatccccaGTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACC
EST: AGCTCGAAGGAGAGACCCACTCTTG GTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACCEST: gi|18041364|gb|BM309658.1|BM309658
genomic: AGCTCGAAGGAGAGACCCACTCTTGggtaagtttc ... tccatccccaGTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACC
EST: AGCTCGAAGGAGAGACCCACTCTTG GTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACCEST: gi|151394651|gb|EV264522.1|EV264522
genomic: AGCTCGAAGGAGAGACCCACTCTTGggtaagtttc ... tccatccccaGTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACC
EST: AGCTCGAAGGAGAGACCCACTCTTG GTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACCEST: gi|120494210|gb|EH222377.1|EH222377
genomic: AGCTCGAAGGAGAGACCCACTCTTGggtaagtttc ... tccatccccaGTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACC
EST: AGCTCGAAGGAGAGACCCACTCTTG GTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACCEST: gi|11413000|gb|BF425020.1|BF425020
genomic: AGCTCGAAGGAGAGACCCACTCTTGggtaagtttc ... tccatccccaGTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACC
EST: AGCTCGAAGGAGAGACCCACTCTTG GTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACCEST: gi|18041470|gb|BM309764.1|BM309764
genomic: AGCTCGAAGGAGAGACCCACTCTTGggtaagtttc ... tccatccccaGTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACC
EST: AGCTCGAAGGAGAGACCCACTCTTG GTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACCEST: gi|209702200|gb|BW673232.1|BW673232
genomic: AGCTCGAAGGAGAGACCCACTCTTGggtaagtttc ... tccatccccaGTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACC
EST: AGCTCGAAGGAGAGACCCACTCTTG GTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACCEST: gi|9987802|gb|BE661910.1|BE661910
genomic: AGCTCGAAGGAGAGACCCACTCTTGggtaagtttc ... tccatccccaGTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACC
EST: AGCTCGAAGGAGAGACCCACTCTTG GTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACC
genomic: AGCTCGAAGGAGAGACCCACTCTTGggtaagtttc ... tccatccccaGTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACC
catgtatgtttaatttatgttgtgggcacttatcttttgtttatctccatccccaGTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACCCTGCAGCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGG
gtttaat putative branch site (score: 4)
tcttttgtttatctcc putative PPT
atgtttaatttatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttgtaggctattgcatgtgagcttatattattgtgttatttatcatgtatgtttaatttatgttgtgggcacttatcttttgtttatctccatccccaGTGGCACGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACCCTGCAGCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - -tgcatgt
- - - - - - - - - - - - - - - - - - - - - - -catgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgtggg