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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTCTCTGTCTCTCTCTCTCTCTCTCTCGCTCTTCTTCTCATCAAGCACAGAGTTACAGACTCACCGATCTTCCGATTCTCTTTCGTCTTGGTTTATGAggttatcttctttctctattctcctcttctatgcgctttcgcgtttcgcgtttcacagatctaacccatcgcaacgcgattccttttttcaattcccctt...

Basic information

species Glycine max
transcript GLYMA18G47780.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120531863|gb|EH259996.1|EH259996
EST:     AGAGTTACAGACTCACCGATCTTCCGATTCTCTTTCGTCTTGGTTTATGA                         GCTCGAAGGAGAGACCCACTCTTG
genomic: AGAGTTACAGACTCACCGATCTTCCGATTCTCTTTCGTCTTGGTTTATGAggttatcttc ... tttatttgcaGCTCGAAGGAGAGACCCACTCTTG
EST: gi|23727845|gb|BU761958.1|BU761958
EST:     AGAGTTACAGACTCACCGATCTTCCGATTCTCTTTCGTCTTGGTTTATGA                         GCTCGAAGGAGAGACCCACTCTTG
genomic: AGAGTTACAGACTCACCGATCTTCCGATTCTCTTTCGTCTTGGTTTATGAggttatcttc ... tttatttgcaGCTCGAAGGAGAGACCCACTCTTG
EST: gi|21889224|gb|BQ742437.1|BQ742437
EST:     AGAGTTACAGACTCACCGATCTTCCGATTCTCTTTCGTCTTGGTTTATGA                         GCTCGAAGGAGAGACCCACTCTTG
genomic: AGAGTTACAGACTCACCGATCTTCCGATTCTCTTTCGTCTTGGTTTATGAggttatcttc ... tttatttgcaGCTCGAAGGAGAGACCCACTCTTG
EST: gi|10233547|gb|BE802435.1|BE802435
EST:     AGAGTTACAGACTCACCGATCTTCCGATTCTCTTTCGTCTTGGTTTATGA                         GCTCGAAGGAGAGACCCACTCTTG
genomic: AGAGTTACAGACTCACCGATCTTCCGATTCTCTTTCGTCTTGGTTTATGAggttatcttc ... tttatttgcaGCTCGAAGGAGAGACCCACTCTTG
EST: gi|10709161|gb|BF008885.1|BF008885
EST:     AGAGTTACAGACTCACCGATCTTCCGATTCTCTTTCGTCTTGGTTTATGA                         GCTCGAAGGAGAGACCCACTCTTG
genomic: AGAGTTACAGACTCACCGATCTTCCGATTCTCTTTCGTCTTGGTTTATGAggttatcttc ... tttatttgcaGCTCGAAGGAGAGACCCACTCTTG
EST: gi|17963939|gb|BM270682.1|BM270682
EST:     AGAGTTACAGACTCACCGATCTTCCGATTCTCTTTCGTCTTGGTTTATGA                         GCTCGAAGGAGAGACCCACTCTTG
genomic: AGAGTTACAGACTCACCGATCTTCCGATTCTCTTTCGTCTTGGTTTATGAggttatcttc ... tttatttgcaGCTCGAAGGAGAGACCCACTCTTG
EST: gi|4292136|gb|AI437719.1|AI437719
EST:     CTTCCGATTCTCTTTCGTCTTGGTTTATGA                         GCTCGAAGGAGAGACCCACTCTTG
genomic: CTTCCGATTCTCTTTCGTCTTGGTTTATGAggttatcttc ... tttatttgcaGCTCGAAGGAGAGACCCACTCTTG
EST: gi|14126644|gb|BG791082.1|BG791082
EST:     AGAGTTACAGACTCACCGATCTTCCGATTCTCTTTCGTCTTGGTTTATGA                         GCTCGAAGGAGAGACCCACTCTTG
genomic: AGAGTTACAGACTCACCGATCTTCCGATTCTCTTTCGTCTTGGTTTATGAggttatcttc ... tttatttgcaGCTCGAAGGAGAGACCCACTCTTG
EST: gi|24135721|gb|BU926231.1|BU926231
EST:     AGAGTTACAGACTCACCGATCTTCCGATTCTCTTTCGTCTTGGTTTATGA                         GCTCGAAGGAGAGACCCACTCTTG
genomic: AGAGTTACAGACTCACCGATCTTCCGATTCTCTTTCGTCTTGGTTTATGAggttatcttc ... tttatttgcaGCTCGAAGGAGAGACCCACTCTTG
EST: gi|14125668|gb|BG790106.1|BG790106
EST:     AGAGTTACAGACTCACCGATCTTCCGATTCTCTTTCGTCTTGGTTTATGA                         GCTCGAAGGAGAGACCCACTCTTG
genomic: AGAGTTACAGACTCACCGATCTTCCGATTCTCTTTCGTCTTGGTTTATGAggttatcttc ... tttatttgcaGCTCGAAGGAGAGACCCACTCTTG
EST: gi|17518498|gb|BM187540.1|BM187540
EST:     TACAGACTCACCGATCTTCCGATTCTCTTTCGTCTTGGTTTATGA                         GCTCGAAGGAGAGACCCACTCTTG
genomic: TACAGACTCACCGATCTTCCGATTCTCTTTCGTCTTGGTTTATGAggttatcttc ... tttatttgcaGCTCGAAGGAGAGACCCACTCTTG
EST: gi|19345855|gb|BM890735.1|BM890735
EST:     AGAGTTACAGACTCACCGATCTTCCGATTCTCTTTCGTCTTGGTTTATGA                         GCTCGAAGGAGAGACCCACTCTTG
genomic: AGAGTTACAGACTCACCGATCTTCCGATTCTCTTTCGTCTTGGTTTATGAggttatcttc ... tttatttgcaGCTCGAAGGAGAGACCCACTCTTG
EST: gi|20811794|gb|BQ296272.1|BQ296272
EST:     AGAGTTACAGACTCACCGATCTTCCGATTCTCTTTCGTCTTGGTTTATGA                         GCTCGAAGGAGAGACCCACTCTTG
genomic: AGAGTTACAGACTCACCGATCTTCCGATTCTCTTTCGTCTTGGTTTATGAggttatcttc ... tttatttgcaGCTCGAAGGAGAGACCCACTCTTG
EST: gi|151410055|gb|EV279863.1|EV279863
EST:     AGAGTTACAGACTCACCGATCTTCCGATTCTCTTTCGTCTTGGTTTATGA                         GCTCGAAGGAGAGACCCACTCTTG
genomic: AGAGTTACAGACTCACCGATCTTCCGATTCTCTTTCGTCTTGGTTTATGAggttatcttc ... tttatttgcaGCTCGAAGGAGAGACCCACTCTTG
EST: gi|18039719|gb|BM308013.1|BM308013
EST:     AGAGTTACAGACTCACCGATCTTCCGATTCTCTTTCGTCTTGGTTTATGA                         GCTCGAAGGAGAGACCCACTCTTG
genomic: AGAGTTACAGACTCACCGATCTTCCGATTCTCTTTCGTCTTGGTTTATGAggttatcttc ... tttatttgcaGCTCGAAGGAGAGACCCACTCTTG
EST: gi|18041364|gb|BM309658.1|BM309658
EST:     AGAGTTACAGACTCACCGATCTTCCGATTCTCTTTCGTCTTGGTTTATGA                         GCTCGAAGGAGAGACCCACTCTTG
genomic: AGAGTTACAGACTCACCGATCTTCCGATTCTCTTTCGTCTTGGTTTATGAggttatcttc ... tttatttgcaGCTCGAAGGAGAGACCCACTCTTG
EST: gi|151394651|gb|EV264522.1|EV264522
EST:     AGAGTTACAGACTCACCGATCTTCCGATTCTCTTTCGTCTTGGTTTATGA                         GCTCGAAGGAGAGACCCACTCTTG
genomic: AGAGTTACAGACTCACCGATCTTCCGATTCTCTTTCGTCTTGGTTTATGAggttatcttc ... tttatttgcaGCTCGAAGGAGAGACCCACTCTTG
EST: gi|120494210|gb|EH222377.1|EH222377
EST:     AGAGTTACAGACTCACCGATCTTCCGATTCTCTTTCGTCTTGGTTTATGA                         GCTCGAAGGAGAGACCCACTCTTG
genomic: AGAGTTACAGACTCACCGATCTTCCGATTCTCTTTCGTCTTGGTTTATGAggttatcttc ... tttatttgcaGCTCGAAGGAGAGACCCACTCTTG
EST: gi|11413000|gb|BF425020.1|BF425020
EST:     AGAGTTACAGACTCACCGATCTTCCGATTCTCTTTCGTCTTGGTTTATGA                         GCTCGAAGGAGAGACCCACTCTTG
genomic: AGAGTTACAGACTCACCGATCTTCCGATTCTCTTTCGTCTTGGTTTATGAggttatcttc ... tttatttgcaGCTCGAAGGAGAGACCCACTCTTG
EST: gi|18041470|gb|BM309764.1|BM309764
EST:     AGAGTTACAGACTCACCGATCTTCCGATTCTCTTTCGTCTTGGTTTATGA                         GCTCGAAGGAGAGACCCACTCTTG
genomic: AGAGTTACAGACTCACCGATCTTCCGATTCTCTTTCGTCTTGGTTTATGAggttatcttc ... tttatttgcaGCTCGAAGGAGAGACCCACTCTTG
EST: gi|209702200|gb|BW673232.1|BW673232
EST:     AGAGTTACAGACTCACCGATCTTCCGATTCTCTTTCGTCTTGGTTTATGA                         GCTCGAAGGAGAGACCCACTCTTG
genomic: AGAGTTACAGACTCACCGATCTTCCGATTCTCTTTCGTCTTGGTTTATGAggttatcttc ... tttatttgcaGCTCGAAGGAGAGACCCACTCTTG
EST: gi|9987802|gb|BE661910.1|BE661910
EST:     AGAGTTACAGACTCACCGATCTTCCGATTCTCTTTCGTCTTGGTTTATGA                         GCTCGAAGGAGAGACCCACTCTTG
genomic: AGAGTTACAGACTCACCGATCTTCCGATTCTCTTTCGTCTTGGTTTATGAggttatcttc ... tttatttgcaGCTCGAAGGAGAGACCCACTCTTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCTCTCTGTCTCTCTCTCTCTCTCTCTCGCTCTTCTTCTCATCAAGCACAGAGTTACAGACTCACCGATCTTCCGATTCTCTTTCGTCTTGGTTTATGAggttatcttctttctctattctcctcttctatgcgctttcgcgtttcgcgtttcacagatctaacccatcgcaacgcgattccttttttcaattcccctt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcccct