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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACCCTGCAGCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTggtaatgttacggttgcattttgcagcctttcatttgtttaatgtttgttttgcatccacactgtctctctggtttattcatataactgattttgtaatttgtgcctgca

Basic information

species Glycine max
transcript GLYMA18G47780.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G47780.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os11g21990.1 (Oryza sativa), 5'ss of exon 3
CGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACCCTGCAGCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTggtaatgttacggttgcattttgcagcctttcatttgtttaatgtttgttttgcatccacactgtctctctggtttattcatataactgattttgtaatttgtgcctgca
 ||||||||||||||||||||| ||||||||||| ||  ||||||||||| ||||||| |||||| | |||||||||||| ||||||||||||| || ||||| | |    | |     |      | | |||  |   |   || |  |||   | ||    |    |||| |  | | || ||      | | || ||| |       
-GCGGATTAAGACCCGCAAACGGAATATTGCTGCTCCTTTGGACCCTGCATCATTCTCTGATGCAATTGTCCAGATTTATCTGGATAATGCTGGAGACCTGgtta-gccctgttaaacatccttgacatgtcacctaactttcgtctcatttatcttcagttgggtgttctgataaaat-atttattgttgtctatacttttt-------

upper sequence: GLYMA18G47780.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM5G877316_T02 (Zea mays), 5'ss of exon 3
CGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACCCTGCAGCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTggtaatgttacggttgcattttgcagcctttcatttgtttaatgtttgttttg-catccacac-tgtctctctggtttattcatataactgattttgtaatttgtgcctgca
 |||||||||||||||||| || || ||||| || ||  ||||||||||| ||||||| |||||| | |||||||||||| ||||||||| ||| |||||||| | |       ||  | |  ||   || |||||  |  |||||  || || |||  | |  | |   | | | ||  | | ||| |   |  ||| || | |       
-GCGGATTAAGACCCGCAAGCGGAACATTGCAGCTCCTTTGGACCCTGCATCATTCTCTGATGCAATTGTCCAGATTTATCTGGATAATGGTGGAGATCTGgttaggccttctgtgggtgtacca--tttgcatttcat--atgttatttctgtcattgagatgtatgcatttagatttatgaaatatcct-tgatgtgatatata------

upper sequence: GLYMA18G47780.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G012416_T04 (Zea mays), 5'ss of exon 3
CGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACCCTGCAGCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTggtaatgttacggttgcattttgcagcctttcatttgtttaatgtttgttttgcatccacactgtctctctggtttattcatataactgattttgtaatttgtgcctgca
 |||||||||||||||||| || |||||||| || ||  ||||||||||| ||||||| |||||| | || ||||| ||||||||||||| ||| || ||||| | |    | |||  | |     || ||    | |   ||||   || ||           |   ||| | ||  | | |||  |  |  ||| || ||        
-GCGGATTAAGACCCGCAAGCGGAATATTGCAGCTCCTTTGGACCCTGCATCATTCTCTGATGCAATTGTTCAGATCTATTTGGATAATGGTGGAGACCTGgttaggccttgtttgggtgt----accatttgcatttcacatgtcatttatgttgttgagagatgcatctagatttatgaaata-ttcttgatgtgatatgaagt----

upper sequence: GLYMA18G47780.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM5G877316_T03 (Zea mays), 5'ss of exon 3
CGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACCCTGCAGCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTggtaatgttacggttgcattttgcagcctttcatttgtttaatgtttgttttg-catccacac-tgtctctctggtttattcatataactgattttgtaatttgtgcctgca------
             |||||| || || ||||| || ||  ||||||||||| ||||||| |||||| | |||||||||||| ||||||||| ||| |||||||| | |       ||  | |  ||   || |||||  |  |||||  || || |||  | |  | |   | | | ||  | | ||| |   |  ||| || | |   |  |      
-------------CCGCAAGCGGAACATTGCAGCTCCTTTGGACCCTGCATCATTCTCTGATGCAATTGTCCAGATTTATCTGGATAATGGTGGAGATCTGGTTAGGCCTTCTgtgggtgtacca--tttgcatttcat--atgttatttctgtcattgagatgtatgcatttagatttatgaaatatcct-tgatgtgatatatagttagattccta

upper sequence: GLYMA18G47780.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G65220.1 (Arabidopsis thaliana), 5'ss of exon 3
CGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACCCTGCAGCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTggtaatgttacggttgcattttgcagcctttcatttgtttaatgtttgttttgcatccacactgtctctctggtttattcatataactgattttgtaatttgtgcctgca
 ||||||||||||||||||| | ||||||||||| || || |||||||| || || || |||||| | || ||||||||| ||||||||||||||||||||||| | ||    | |  ||||  |    || |||| | |    |||  ||||| |  | | ||||   |   || | | ||     || ||||||  |||||    |  
-GCGGATTAAGACCCGCAAAAGGAATATTGCTGCTCCTCTCGACCCTGCTGCTTTTTCTGATGCACTAGTTCAGATTTATCTGGATAATGCTGGTGATCTGgtactttttttttcgtgtttt--aagtatttatttatctgt--ttttatttgcttgtaaaatgtcgtgcaccttaacttatgactttgtttttgt--tttgtcttag--

upper sequence: GLYMA18G47780.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G36230.1 (Arabidopsis thaliana), 5'ss of exon 3
CGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACCCTGCAGCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTggtaatgttacggtt--gcattttgcagcctttcatttgtttaatgtttgttttgcatccacactgtctctctggtttattcatataactgattttgtaatttgtgcctgca
 ||||||||||||||||||||| ||||||||||| || |||||||||||||| || || ||||||||||||||||||||    |||||||||||||||||||||   ||   ||   | |||||   | | | | ||  | |   | |   ||||||   |   | | |  |  | || ||    |   | |                    
-GCGGATTAAGACCCGCAAACGGAATATTGCTGCTCCTCTGGACCCTGCAGCCTTTTCTGATGCAGTGGTCCAGATTTACCATGATAATGCTGGTGATCTGgtaggattggtgtctagaatttttatgtcatgctttgatctggagatgtgtttgcacttaacttatattac--gcttgtttgcttggtttag-------------------

upper sequence: GLYMA18G47780.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0023g00670.t01 (Vitis vinifera), 5'ss of exon 4
CGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACCCTGCAGCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTggtaatgttacggttgcattttgcagcctttcatttgtttaatgtttgttttgcatccacactgtctctctggtttattcatataactgattttgtaatttgtgcctgca-
 ||||||||||||||||||||| |||||||| |||||||||||||||||| ||||  | ||||||||||||||||||||| ||||||||||||||||||||||||| || |   ||  | |   | |||   || |||||  |||||          |||  | ||  | ||||          | || || | | ||||| |   |||| 
-GCGGATTAAGACCCGCAAACGGAATATTGCAGCGCCGCTGGACCCTGCAACATTTGCAGATGCAGTGGTCCAGATTTATCTGGATAATGCTGGTGATCTGgtaatttttc--ctgtgtctgaaatcct---atatgttttgtgttt----------caccttatcattttggt--------gcagctaatatggcaatttctaaatgcag

upper sequence: GLYMA18G47780.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ31357 (Selaginella moellendorffii), 5'ss of exon 3
CGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACCCTGCAGCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTggtaatgttacggttgcattttgcagcctttcatttgtttaatgtttgttttgcatccacactgtctctctggtttattcatataactgattttgtaatttgtgcctgca
 ||||||||||||||||||||| ||||||||    ||| |||||||  |  | ||| |||||||  | |||||||| || |||||| |||||||||||||||| |        ||     ||||   | |    ||| ||  |  || || |   | |     || | ||| |                                     
-GCGGATTAAGACCCGCAAACGGAATATTGCAATTCCGTTGGACCCATCTTCTTTCGCGGATGCTATAGTCCAGATCTACTTGGATCATGCTGGTGATCTGgtgag-----aattatgccttgcgagcgtgatcttgatttttaattattct---ttcctctggtttttctag-------------------------------------

upper sequence: GLYMA18G47780.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ06557 (Selaginella moellendorffii), 5'ss of exon 3
CGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACCCTGCAGCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTggtaatgttacggttgcattttgcagcctttcatttgtttaatgtttgttttgcatccacactgtctctctggtttattcatataactgattttgtaatttgtgcctgca
 ||||||||||||||||||||| ||||||||    ||| |||||||  |  | ||| |||||||  | |||||||| || |||||| |||||||||||||||| |        ||     ||||   | |    ||| ||  |  || || |   | |     || | ||| |                                     
-GCGGATTAAGACCCGCAAACGGAATATTGCAATTCCGTTGGACCCATCTTCTTTCGCGGATGCTATAGTCCAGATCTACTTGGATCATGCTGGTGATCTGgtgag-----aattatgccttgcgaacgtgatcttgatttttaattattct---ttcctctggtttttctag-------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120531863|gb|EH259996.1|EH259996
EST:     GCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCT                         GGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATA
genomic: GCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTggtaatgtta ... tgtgcctgcaGGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATA
EST: gi|23727845|gb|BU761958.1|BU761958
EST:     GCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCT                         GGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATA
genomic: GCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTggtaatgtta ... tgtgcctgcaGGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATA
EST: gi|21889224|gb|BQ742437.1|BQ742437
EST:     GCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCT                         GGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATA
genomic: GCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTggtaatgtta ... tgtgcctgcaGGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATA
EST: gi|10233547|gb|BE802435.1|BE802435
EST:     GCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCT                         GGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATA
genomic: GCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTggtaatgtta ... tgtgcctgcaGGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATA
EST: gi|10709161|gb|BF008885.1|BF008885
EST:     GCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCT                         GGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATA
genomic: GCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTggtaatgtta ... tgtgcctgcaGGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATA
EST: gi|17963939|gb|BM270682.1|BM270682
EST:     GCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCT                         GGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATA
genomic: GCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTggtaatgtta ... tgtgcctgcaGGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATA
EST: gi|4292136|gb|AI437719.1|AI437719
EST:     GCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCT                         GGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATA
genomic: GCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTggtaatgtta ... tgtgcctgcaGGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATA
EST: gi|14126644|gb|BG791082.1|BG791082
EST:     GCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCT                         GGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATA
genomic: GCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTggtaatgtta ... tgtgcctgcaGGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATA
EST: gi|24135721|gb|BU926231.1|BU926231
EST:     GCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCT                         GGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATA
genomic: GCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTggtaatgtta ... tgtgcctgcaGGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATA
EST: gi|23730459|gb|BU763318.1|BU763318
EST:     AGATTTATTTGGATAATGCTGGTGATCT                         GGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATA
genomic: AGATTTATTTGGATAATGCTGGTGATCTggtaatgtta ... tgtgcctgcaGGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATA
EST: gi|14125668|gb|BG790106.1|BG790106
EST:     GCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCT                         GGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATA
genomic: GCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTggtaatgtta ... tgtgcctgcaGGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATA
EST: gi|17518498|gb|BM187540.1|BM187540
EST:     GCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCT                         GGAACTTATTGCTAAGAGTTTTTTATCTTCAGACCTTAACTTTTCAAGATA
genomic: GCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTggtaatgtta ... tgtgcctgcaGGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATA
EST: gi|19345855|gb|BM890735.1|BM890735
EST:     GCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCT                         GGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATA
genomic: GCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTggtaatgtta ... tgtgcctgcaGGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATA
EST: gi|20811794|gb|BQ296272.1|BQ296272
EST:     GCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCT                         GGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATA
genomic: GCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTggtaatgtta ... tgtgcctgcaGGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATA
EST: gi|151410055|gb|EV279863.1|EV279863
EST:     GCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCT                         GGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATA
genomic: GCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTggtaatgtta ... tgtgcctgcaGGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATA
EST: gi|18039719|gb|BM308013.1|BM308013
EST:     GCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCT                         GGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATA
genomic: GCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTggtaatgtta ... tgtgcctgcaGGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATA
EST: gi|11275114|gb|BF325437.1|BF325437
EST:     GCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCT                         GGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATA
genomic: GCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTggtaatgtta ... tgtgcctgcaGGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATA
EST: gi|18041364|gb|BM309658.1|BM309658
EST:     GCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCT                         GGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATA
genomic: GCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTggtaatgtta ... tgtgcctgcaGGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATA
EST: gi|151394651|gb|EV264522.1|EV264522
EST:     GCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCT                         GGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATA
genomic: GCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTggtaatgtta ... tgtgcctgcaGGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATA
EST: gi|120494210|gb|EH222377.1|EH222377
EST:     GCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCT                         GGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATA
genomic: GCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTggtaatgtta ... tgtgcctgcaGGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATA
EST: gi|11413000|gb|BF425020.1|BF425020
EST:     GCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCT                         GGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATA
genomic: GCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTggtaatgtta ... tgtgcctgcaGGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATA
EST: gi|18041470|gb|BM309764.1|BM309764
EST:     GCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCT                         GGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATA
genomic: GCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTggtaatgtta ... tgtgcctgcaGGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATA
EST: gi|209702200|gb|BW673232.1|BW673232
EST:     GCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCT                         GGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATA
genomic: GCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTggtaatgtta ... tgtgcctgcaGGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATA
EST: gi|9987802|gb|BE661910.1|BE661910
EST:     GCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCT                         GGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATA
genomic: GCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTggtaatgtta ... tgtgcctgcaGGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGCGGATTAAGACCCGCAAACGAAATATTGCTGCGCCGCTGGACCCTGCAGCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTggtaatgttacggttgcattttgcagcctttcatttgtttaatgtttgttttgcatccacactgtctctctggtttattcatataactgattttgtaatttgtgcctgca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG