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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGAAATTGAGGTGGTGCGGATCTTGTGGGATGTTTTAATGGATGCTGTTCAGTGGTCTGGAAAAAATCAGCAACAGAATGCAAATGCAGCCCTTCGTCAggtatcctttagatattttgcatgtatgccaatttatatttgcttgcttcgaaatttttacccttgttctcattgacctcgtctacttaggtttcttatt...

Basic information

species Glycine max
transcript GLYMA18G47780.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G47780.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os11g21990.1 (Oryza sativa), 5'ss of exon 6
CGGAAATTGAGGTGGTGCGGATCTTGTGGGATGTTTTAATGGATGCTGTTCAGTGGTCTGGAAAAAATCAGCAACAGAATGCAAATGCAGCCCTTCGTCAggtatcctttagatattttgcatgtatgccaattta-tatttgcttgcttcgaa-atttttacccttgttctcattgacctcgtctacttaggtttcttatt
  || || ||||| || || ||  | ||||||||  | ||||| ||||||||||||||||| || || |||||||| ||| | ||| |||| ||||| ||||||    ||     ||| ||||  ||   ||   | |  | |  | ||| |||  | | || | | ||||   ||       |||||||  |  |  ||  
-TGATATAGAGGTTGTTCGCATGCTATGGGATGTGCTGATGGAGGCTGTTCAGTGGTCTGGGAAGAACCAGCAACAAAATTCTAATTCAGCACTTCGGCAGgtaaatctttttattttggcattgattttaaagcagttgtgggatacttggaatgtgtatatcttagttcagcttctgaaattctacttttgcctactag-

upper sequence: GLYMA18G47780.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM5G877316_T02 (Zea mays), 5'ss of exon 6
CGGAAATTGAGGTGGTGCGGATCTTGTGGGATGTTTTAATGGATGCTGTTCAGTGGTCTGGAAAAAATCAGCAACAGAATGCAAATGCAGCCCTTCGTCAggtatcctttagatattttgcatgtatgccaatttatatttgcttgcttcgaaatttttacccttgttctcat---tgacctcgtctacttaggtttcttatt
  ||  | |||||  | || || |||||||||||  | ||||| ||||||||||||||||| || || |||||||||||| | |||||||| ||||| |||||| | | | ||  |||||  |   | ||||     |        | | |||    | ||      ||  ||   | || | |  |  || ||   ||||  
-TGATCTAGAGGTCATTCGCATGTTGTGGGATGTGCTCATGGAGGCTGTTCAGTGGTCTGGGAAGAACCAGCAACAGAATTCTAATGCAGCACTTCGGCAGgtaacgtgttgaagttttggtttgtttccaaggccaagaactggacattgaatgcctaacataaactcgaatgccttacattgcttgttttggcacctta--

upper sequence: GLYMA18G47780.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G012416_T04 (Zea mays), 5'ss of exon 6
CGGAAATTGAGGTGGTGCGGATCTTGTGGGATGTTTTAATGGATGCTGTTCAGTGGTCTGGAAAAAATCAGCAACAGAATGCAAATGCAGCCCTTCGTCAggta-tcctttagatattttgcatgtatgccaatttatatttgcttgcttcgaaatttttacccttgttctcat-tgacctcgtctacttaggtttcttatt-----
  ||  | |||||  | || || |||||||||||  | ||||| ||||||||||||||||| || || ||||| || ||| | |||||||| ||| | |||||| |  | |  |  |||||| |   |  ||| | | |||   |  ||    ||  |  || ||||||    | |||| |    ||||| | |||  || |     
-TGATTTAGAGGTTATTCGCATGTTGTGGGATGTGCTCATGGAGGCTGTTCAGTGGTCTGGGAAGAACCAGCAGCAAAATTCCAATGCAGCACTTAGGCAGgtagtgttgttaaacttttgctttctttacaagt-acattgagtacct----aacatgaactcttgttgatgtatgacttacattactt-gttttagtacttttaa

upper sequence: GLYMA18G47780.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G36230.1 (Arabidopsis thaliana), 5'ss of exon 6
CGGAAATTGAGGTGGTGCGGATCTTGTGGGATGTTTTAATGGATGCTGTTCAGTGGTCTGGAAAAAATCAGCAACAGAATGCAAATGCAGCCCTTCGTCAggta---tcctttagatattttgcatgtatg--ccaatttatatttgct-tgcttcgaaatttttacccttgttctcattgacctcgtctacttaggtttcttatt
  || |||||||| |||||  |  | ||||||| ||||||||||||||||||||||||||||||||| ||||| || ||||||||| | |  || || ||||||   |  | |||||||  ||     |     |||||||||| ||   ||      ||   || |   |||  |   | ||  |    |||  |          
-TGACATTGAGGTTGTGCGTGTTGTTTGGGATGGTTTAATGGATGCTGTTCAGTGGTCTGGAAAAAACCAGCAGCAAAATGCAAATTCTGTTCTGCGCCAGgtaagattttatagatatgatgagccaaccattcaatttatatctgtcatgtcatataagagttccatatgtagtgtgttactccacaaactgcgaaaga-----

upper sequence: GLYMA18G47780.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv04s0023g00670.t01 (Vitis vinifera), 5'ss of exon 7
CGGAAATTGAGGTGGTGCGGATCTTGTGGGATGTTTTAATGGATGCTGTTCAGTGGTCTGGAAAAAATCAGCAACAGAATGCAAATGCAGCCCTTCGTCAggtatcctttagatattttgcatgtatgccaatttatatttgcttgcttcgaaatttttacccttgttctcattgacctcgtctacttaggtttcttatt---
  || |||||||| ||||| ||||||||||||||  |||||||||| |||||||||||||| ||||| ||||| |||||||| |||||||| || || ||||||| |||| | | | ||   | | |     | | ||         ||  ||  || ||   |  |  |   |    | |  |  ||  |      ||    
-AGACATTGAGGTTGTGCGAATCTTGTGGGATGTCATAATGGATGCAGTTCAGTGGTCTGGGAAAAACCAGCAGCAGAATGCCAATGCAGCTCTACGCCAGgtatgcttttggtgtattatttctttatt--tctgtaccaaaaacatttaaatgttctatattcatatttgcttgtatagagtgattgagccaaagatattg

upper sequence: GLYMA18G47780.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ06557 (Selaginella moellendorffii), 5'ss of exon 7
CGGAAATTGAGGTGGTGCGGATCTTGTGGGATGTTTTAATGGATGCTGTTCAGTGGTCTGGAAAAAATCAGCAACAGAATGCAAATGCAGCCCTTCGTCAggtatcctttagatattttgcatgtatgccaatttatatttgcttgcttcgaaatttttacccttgttctcattgacctcgtctacttaggtttcttatt
  ||  | || || |||||||   ||||||||| | ||||||||||||| |||||||| || || ||||| || |||||||  |||   || || || |||||    |||  |  | |  || ||      |     | |  |   ||||  | || | |  |                                     
-CGACGTGGACGTTGTGCGGACGGTGTGGGATGCTCTAATGGATGCTGTACAGTGGTCAGGCAAGAATCAACAGCAGAATGTCAATCTCGCTCTGCGACAGgttagtttttaagctctctcacgtcgtaagaagcgaagtaacgctcttcttatttctaatgcacag---------------------------------

upper sequence: GLYMA18G47780.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ31357 (Selaginella moellendorffii), 5'ss of exon 7
CGGAAATTGAGGTGGTGCGGATCTTGTGGGATGTTTTAATGGATGCTGTTCAGTGGTCTGGAAAAAATCAGCAACAGAATGCAAATGCAGCCCTTCGTCAggtatcctttagatattttgcatgtatgccaatttatatttgcttgcttcgaaatttttacccttgttctcattgacctcgtctacttaggtttcttatt
  ||  | || || |||||||   ||||||||| | ||||||||||||| |||||||| || || ||||| || |||||||  |||   || || || |||||    |||  |  | |  || ||      |     | |  |   ||||  | || | |  |                                     
-CGACGTGGACGTTGTGCGGACGGTGTGGGATGCTCTAATGGATGCTGTACAGTGGTCAGGCAAGAATCAACAGCAGAATGTCAATCTCGCTCTGCGACAGgttagtttttaagttctctcacgtcgtaagaagcgaagtaacgctcttcttatttctaatgcacag---------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193556907|gb|FK512340.1|FK512340
EST:     CAGTGGTCTGGAAAAAATCAGCAACAGAATGCCAATGCAGCCCTTCGTCA                         GGTAAAAACTTGGGCAGAATTGTTGAATACATTCTG
genomic: CAGTGGTCTGGAAAAAATCAGCAACAGAATGCAAATGCAGCCCTTCGTCAggtatccttt ... tcatggtgaaGGTAAAAACTTGGGCAGAATTGTTGAATACATTCTG
EST: gi|14990170|gb|BI315843.1|BI315843
EST:     CAGCCCTTCGTCA                         GGTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCAGCGGGAAACT
genomic: CAGCCCTTCGTCAggtatccttt ... tcatggtgaaGGTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCAGCGGGAAACT
EST: gi|151401127|gb|EV270941.1|EV270941
EST:     CAGTGGTCTGGAAAAAATCAGCAACAGAATGCAAATGCAGCCCTTCGTCA                         GGTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCAGCGGGAAACT
genomic: CAGTGGTCTGGAAAAAATCAGCAACAGAATGCAAATGCAGCCCTTCGTCAggtatccttt ... tcatggtgaaGGTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCAGCGGGAAACT
EST: gi|10846257|gb|BF071303.1|BF071303
EST:     CAGTGGTCTGGAAAAAATCAGCAACAGAATGCAAATGCAGCCCTTCGTCA                         GGTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCAGCGGGAAACT
genomic: CAGTGGTCTGGAAAAAATCAGCAACAGAATGCAAATGCAGCCCTTCGTCAggtatccttt ... tcatggtgaaGGTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCAGCGGGAAACT
EST: gi|193490663|gb|FK453422.1|FK453422
EST:     CAGTGGTCTGGAAAAAATCAGCAACAGAATGCAAATGCAGCCCTTCGTCA                         GGTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCAGCGGGAAACT
genomic: CAGTGGTCTGGAAAAAATCAGCAACAGAATGCAAATGCAGCCCTTCGTCAggtatccttt ... tcatggtgaaGGTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCAGCGGGAAACT
EST: gi|19347148|gb|BM892028.1|BM892028
EST:     CAGTGGTCTGGAAAAAATCAGCAACAGAATGCAAATGCAGCCCTTCGTCA                         GGTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCAGCGGGAAACT
genomic: CAGTGGTCTGGAAAAAATCAGCAACAGAATGCAAATGCAGCCCTTCGTCAggtatccttt ... tcatggtgaaGGTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCAGCGGGAAACT
EST: gi|31456738|gb|CD398766.1|CD398766
EST:     GAATGCAAATGCAGCCCTTCGTCA                         GGTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCAGCGGGAAACT
genomic: GAATGCAAATGCAGCCCTTCGTCAggtatccttt ... tcatggtgaaGGTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCAGCGGGAAACT
EST: gi|27426423|gb|CA937943.1|CA937943
EST:     CAGTGGTCTGGAAAAAATCAGCAACAGAATGCAAATGCAGCCCTTCGTCA                         GGTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCAGCGGGAAACT
genomic: CAGTGGTCTGGAAAAAATCAGCAACAGAATGCAAATGCAGCCCTTCGTCAggtatccttt ... tcatggtgaaGGTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCAGCGGGAAACT
EST: gi|24135580|gb|BU926090.1|BU926090
EST:     CAGTGGTCTGGAAAAAATCAGCAACAGAATGCTAATGCAGTGCTTCGTCA                         GGCAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCAGCGGGAAACT
genomic: CAGTGGTCTGGAAAAAATCAGCAACAGAATGCAAATGCAGCCCTTCGTCAggtatccttt ... tcatggtgaaGGTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCAGCGGGAAACT
EST: gi|192327753|gb|FK022382.1|FK022382
EST:     CAGTGGTCTGGAAAAAATCAGCAACAGAATGCAAATGCAGCCCTTCGTCA                         GGTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCAGCGGGAAACT
genomic: CAGTGGTCTGGAAAAAATCAGCAACAGAATGCAAATGCAGCCCTTCGTCAggtatccttt ... tcatggtgaaGGTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCAGCGGGAAACT
EST: gi|18734887|gb|BM528442.1|BM528442
EST:     CAGTGGTCTGGAAAAAATCAGCAACAGAATGCAAATGCAGCCCTTCGTCA                         GGTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCAGCGGGAAACT
genomic: CAGTGGTCTGGAAAAAATCAGCAACAGAATGCAAATGCAGCCCTTCGTCAggtatccttt ... tcatggtgaaGGTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCAGCGGGAAACT
EST: gi|22927121|gb|BU544260.1|BU544260
EST:     CAGTGGTCTGGAAAAAATCAGCAACAGAATGCAAATGCAGCCCTTCGTCA                         GGTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCAGCGGGAAACT
genomic: CAGTGGTCTGGAAAAAATCAGCAACAGAATGCAAATGCAGCCCTTCGTCAggtatccttt ... tcatggtgaaGGTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCAGCGGGAAACT
EST: gi|14990964|gb|BI316637.1|BI316637
EST:     CAGTGGTCTGGAAAAAATCAGCAACAGAATGCAAATGCAGCCCTTCGTCA                         GGTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCAGCGGGAAACT
genomic: CAGTGGTCTGGAAAAAATCAGCAACAGAATGCAAATGCAGCCCTTCGTCAggtatccttt ... tcatggtgaaGGTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCAGCGGGAAACT
EST: gi|120533169|gb|EH261302.1|EH261302
EST:     CAGTGGTCTGGAAAAAATCAGCAACAGAATGCAAATGCAGCCCTTCGTCA                         GGTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCAGCGGGAAACT
genomic: CAGTGGTCTGGAAAAAATCAGCAACAGAATGCAAATGCAGCCCTTCGTCAggtatccttt ... tcatggtgaaGGTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCAGCGGGAAACT
EST: gi|254321640|gb|GR824957.1|GR824957
EST:     CAGTGGTCTGGAAAAAATCAGCAACAGAATGCAAATGCAGCCCTTCGTCA                         GGTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCAGCGGGAAACT
genomic: CAGTGGTCTGGAAAAAATCAGCAACAGAATGCAAATGCAGCCCTTCGTCAggtatccttt ... tcatggtgaaGGTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCAGCGGGAAACT
EST: gi|15337352|gb|BI498008.1|BI498008
EST:     CAGTGGTCTGGAAAAAATCAGCAACAGAATGCAAATGCAGCCCTTCGTCA                         GGTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCAGCGGGAAACT
genomic: CAGTGGTCTGGAAAAAATCAGCAACAGAATGCAAATGCAGCCCTTCGTCAggtatccttt ... tcatggtgaaGGTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCAGCGGGAAACT
EST: gi|17518869|gb|BM187911.1|BM187911
EST:     CAGTGGTCTGGAAAAAATCAGCAACAGAATGCAAATGCAGCCCTTCGTCA                         GGTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCAGC
genomic: CAGTGGTCTGGAAAAAATCAGCAACAGAATGCAAATGCAGCCCTTCGTCAggtatccttt ... tcatggtgaaGGTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCAGC
EST: gi|18730241|gb|BM525765.1|BM525765
EST:     CAGTGGTCTGGAAAAAATCAGCAACATAATGCAAATGCAGCCCTTCGTCA                         GGTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCAGCGGGAAACT
genomic: CAGTGGTCTGGAAAAAATCAGCAACAGAATGCAAATGCAGCCCTTCGTCAggtatccttt ... tcatggtgaaGGTAAAAACTTGGGCAGAATTGTTGAATACATTCTGCACCAGCGGGAAACT