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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTGGCTAGCCAGACCAAGATCTACATAATCCTTGAATTTGTAATGGGAGGGGAACTATATGATAAAATTgtaagttttgatgtttatatattatggaatatgttagaggttaattcttctgaacattgataattcccaagtctgaccatttaaattagcaattgttgttgagatgctaacaaactattgttaatgatttgattttatttgttacttatgttacaatttcaccgcttctgaatcggtaggttcag

Basic information

species Glycine max
transcript GLYMA17G12250.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G12250.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv11s0016g05420.t01 (Vitis vinifera), 5'ss of exon 4
GTTTTGGCTAGCCAGACCAAGATCTACATAATCCTTGAATTTGTAATGGGAGGGGAACTATATGATAAAATTgtaagttttgatgtttatatattatggaatatgttagaggttaattcttctgaacattgataattcccaagtctgacca-tttaaattagcaattgttgttgagatgctaacaaactattgttaatgatttgattttatttgttacttatgttacaatttcaccgcttctgaatcggtaggttcag
|| ||||| |||||||| | ||| || || || ||||| ||||| |  ||||| |||||||||||||||||||||||  ||  | | |   |||    | | ||   | | | | || ||||| |  | |  |   |     |  ||   | |||   |  | |||  |     ||                                                                                  
GTCTTGGCCAGCCAGACAACGATATATATTATTCTTGAGTTTGTCACTGGAGGAGAACTATATGATAAAATTgtaaggcttcttctattcttatatatgtacataggaaatgattat-cttctaattacttttgtgttt---gcttggtgagttttggtgtgaaatcatatcatag----------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151394038|gb|EV263909.1|EV263909
EST:     TCTACATAATCCTTGAATTTGTAATGGGAGGGGAACTATATGATAAAATTGTT                       
genomic: TCTACATAATCCTTGAATTTGTAATGGGAGGGGAACTATATGATAAAA---TTgtaagttttg ... gtaggttc
EST: gi|151394038|gb|EV263909.1|EV263909
EST:     TCTACATAATCCTTGAATTTGTAATGGGAGGGGAACTATATGATAAAATTGTT                       
genomic: TCTACATAATCCTTGAATTTGTAATGGGAGGGGAACTATATGATAAAA---TTgtaagttttg ... gtaggttc
EST: gi|151394038|gb|EV263909.1|EV263909
EST:     TCTACATAATCCTTGAATTTGTAATGGGAGGGGAACTATATGATAAAATTGTT                       
genomic: TCTACATAATCCTTGAATTTGTAATGGGAGGGGAACTATATGATAAAA---TTgtaagttttg ... gtaggttc
EST: gi|151394038|gb|EV263909.1|EV263909
EST:     TCTACATAATCCTTGAATTTGTAATGGGAGGGGAACTATATGATAAAATTGTT                       
genomic: TCTACATAATCCTTGAATTTGTAATGGGAGGGGAACTATATGATAAAA---TTgtaagttttg ... gtaggttc