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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTTTGAAGTTGCGCCATCCCTTTTCATGGTTGATGTTCGGAAGGCCACTGGGGATACTTTTGACTACCACAAGgttagcttcagtatttacatatatctgcatttcaatttctcaaaatactttcaacctcttctaataaatgaaatggcatttatgctttgaagttgagaaa...

Basic information

species Glycine max
transcript GLYMA17G12250.2
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G12250.2 (Glycine max), 5'ss of exon 13
lower sequence: Vv11s0016g05420.t01 (Vitis vinifera), 5'ss of exon 14
GTGTTTGAAGTTGCGCCATCCCTTTTCATGGTTGATGTTCGGAAGGCCACTGGGGATACTTTTGACTACCACAAGgttagcttcagtatttacatatatctgcatttcaatttctcaaaatactttcaacctcttctaataaatgaaatggc--atttatgctttgaag-ttgagaaa-
|| ||||||||||| ||||||||||||||||| |||||| | |||||  ||||||||||  |||| || ||||||||| ||||  ||| | || | | |   | ||||| ||      |   ||| |  ||  ||  || |     |    |     ||  |  ||||| || | ||| 
GTTTTTGAAGTTGCACCATCCCTTTTCATGGTGGATGTTAGAAAGGCTGCTGGGGATACACTTGAATATCACAAGgtttgctt--gtactgacttttgttaac-tttcatttggcttcagagcttgcctccaattg-aacatgcacagctaccagagtagaccatgaaggttcaaaaaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17964227|gb|BM270965.1|BM270965
EST:     TCATGGTTGATGTTCGGAAGGCCACTGGGGATACTTTTGACTACCACAAG                         TTTTACAAGAATTTTTGTGGCAAACTAGGAAACATTATTTGGAGACCGGCA
genomic: TCATGGTTGATGTTCGGAAGGCCACTGGGGATACTTTTGACTACCACAAGgttagcttca ... acttttgcagTTTTACAAGAATTTTTGTGGCAAACTAGGAAACATTATTTGGAGACCGGCA
EST: gi|58019760|gb|CX706502.1|CX706502
EST:     TCATGGTTGATGTTCGGAAGGCCACTGGGGATACTTTTGACTACCACAAG                         TTTTACAAGAATTTTTGTGGCAAACTAGGAAACATTATTTGGAGACCGGCA
genomic: TCATGGTTGATGTTCGGAAGGCCACTGGGGATACTTTTGACTACCACAAGgttagcttca ... acttttgcagTTTTACAAGAATTTTTGTGGCAAACTAGGAAACATTATTTGGAGACCGGCA
EST: gi|57574558|gb|CX547533.1|CX547533
EST:     TCATGGTTGATGTTCGGAAGGCCACTGGGGATACTTTTGACTACCACAAG                         TTTTACAAGAATTTTTGTGGCAAACTAGGAAACATTATTTGGAGACCGGCA
genomic: TCATGGTTGATGTTCGGAAGGCCACTGGGGATACTTTTGACTACCACAAGgttagcttca ... acttttgcagTTTTACAAGAATTTTTGTGGCAAACTAGGAAACATTATTTGGAGACCGGCA
EST: gi|22522182|gb|BU080993.1|BU080993
EST:     GTTCGGAAGGCCACTGGGGATACTTTTGACTACCACAAG                         TTTTACAAGAATTTTTGTGGCAAACTAGGAAACATTATTTGGAGACCGGCA
genomic: GTTCGGAAGGCCACTGGGGATACTTTTGACTACCACAAGgttagcttca ... acttttgcagTTTTACAAGAATTTTTGTGGCAAACTAGGAAACATTATTTGGAGACCGGCA
EST: gi|7796569|gb|AW781966.1|AW781966
EST:     TCATGGTTGATGTTCGGAAGGCCACTGGGGATACTTTTGACTACCACAAG                         TTTTACAAGAATTTTTGTGGCAAACTAGGAAACATTATTTGGAGACCGGCA
genomic: TCATGGTTGATGTTCGGAAGGCCACTGGGGATACTTTTGACTACCACAAGgttagcttca ... acttttgcagTTTTACAAGAATTTTTGTGGCAAACTAGGAAACATTATTTGGAGACCGGCA
EST: gi|31458208|gb|CD400236.1|CD400236
EST:     TCATGGTTGATGTTCGGAAGGCCACTGGGGATACTTTTGACTACCACAAG                         TTTTACAAGAATTTTTGTGGCAAACTAGGAAACATTATTTGGAGACCGGCA
genomic: TCATGGTTGATGTTCGGAAGGCCACTGGGGATACTTTTGACTACCACAAGgttagcttca ... acttttgcagTTTTACAAGAATTTTTGTGGCAAACTAGGAAACATTATTTGGAGACCGGCA