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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttgatgtttatatattatggaatatgttagaggttaattcttctgaacattgataattcccaagtctgaccatttaaattagcaattgttgttgagatgctaacaaactattgttaatgatttgattttatttgttacttatgttacaatttcaccgcttctgaatcggtaggttcagCTGGGAAAGCTTTCTGAAAATGAATCTAGGCACTACTTTCAACAACTTATAGACGCAGTTGATCATTGTCATAGAAAGGGTGTGTACCATAGAGACTTGA

Basic information

species Glycine max
transcript GLYMA17G12250.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G12250.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv11s0016g05420.t01 (Vitis vinifera), 3'ss of exon 4
gtaagttttgatgtttatatattatggaatatgttagaggttaattcttctgaacattgataattcccaagtctgaccatttaaattagcaattgttgttgagatgctaacaaactattgttaatgatttgattttatttgttacttatgttacaatttcaccgcttctgaatcggtaggttcagCTGGGAAAGCTTTCTGAAAATGAATCTAGGCACTACTTTCAACAACTTATAGACGCAGTTGATCATTGTCATAGAAAGGGTGTGTACCATAGAGACTTGA
                                                                    | || |  | |    | |    || |||  || || |   || |||||||   | ||  | ||||  |   | || ||| |       ||   | |    || ||    ||||||| |  ||||  || |||||||||||||| ||||  |||||||| || |||||||| || ||    |||||||| || |||||||||||||| ||||      
------------------------------------------------------------------gtaggttttgc-acagcattccaaaaatgtcattcaggt---aaaaaactatccatcatt-tctgatgctgaatatt-cttgt-------ttatgctggccatgcatatacagGTTCACCAAGGAAGACTCTCTGAAAATGAATCCAGGCGATACTTTCAGCAGCTTATAGATGCTGTATCACATTGTCACAGTAAGGGTGTGTACCACAGAG------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151394038|gb|EV263909.1|EV263909
EST:     TCTACATAATCCTTGAATTTGTAATGGGAGGGGAACTATATGATAAAATTGTT                       
genomic: TCTACATAATCCTTGAATTTGTAATGGGAGGGGAACTATATGATAAAA---TTgtaagttttg ... gtaggttc
EST: gi|151394038|gb|EV263909.1|EV263909
EST:     TCTACATAATCCTTGAATTTGTAATGGGAGGGGAACTATATGATAAAATTGTT                       
genomic: TCTACATAATCCTTGAATTTGTAATGGGAGGGGAACTATATGATAAAA---TTgtaagttttg ... gtaggttc
EST: gi|151394038|gb|EV263909.1|EV263909
EST:     TCTACATAATCCTTGAATTTGTAATGGGAGGGGAACTATATGATAAAATTGTT                       
genomic: TCTACATAATCCTTGAATTTGTAATGGGAGGGGAACTATATGATAAAA---TTgtaagttttg ... gtaggttc
EST: gi|151394038|gb|EV263909.1|EV263909
EST:     TCTACATAATCCTTGAATTTGTAATGGGAGGGGAACTATATGATAAAATTGTT                       
genomic: TCTACATAATCCTTGAATTTGTAATGGGAGGGGAACTATATGATAAAA---TTgtaagttttg ... gtaggttc


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattttatttgttacttatgttacaatttcaccgcttctgaatcggtaggttcagCTGGGAAAGCTTTCTGAAAATGAATCTAGGCACTACTTTCAACAACTTATAGACGCAGTTGATCATTGTCATAGAAAGGGTGTGTACCATAGAGACTTGA
 atttgat  putative branch site (score: 5)
     tatttgttacttat  TA-rich tract