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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtgttggaaattgtggtccaagcattcctcttattttttatacgaaagttctatttctgcttaagtcttggttaaaaccatcaatttattttctcaaaagGTGTTTGAAGTTGCGCCATCCCTTTTCATGGTTGATGTTCGGAAGGCCACTGGGGATACTTTTGACTACCACAAG

Basic information

species Glycine max
transcript GLYMA17G12250.2
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G12250.2 (Glycine max), 3'ss of exon 12
lower sequence: Vv11s0016g05420.t01 (Vitis vinifera), 3'ss of exon 13
-----gtgttggaaattgtggtccaagcatt---cctcttattttttatacgaaagttctatttctgcttaagtcttggttaaaacca----------tcaatttattttctcaaaagGTGTTTGAAGTTGCGCCATCCCTTTTCATGGTTGATGTTCGGAAGGCCACTGGGGATACTTTTGACTACCACAAG
      |  | || ||| |      | ||||   ||| || || ||||||   | |    ||||||| |  ||  ||| ||  ||| |          |  |||| || | |    |||| ||||||||||| ||||||||||||||||| |||||| | |||||  ||||||||||  |||| || ||||||
gtaactttctagatatttttcctgcaacattgttcctgttgttctttataaagaggcctgatttctggtgtaggattgtttctaacaaaggttccatctttattttttctgttgttagGTTTTTGAAGTTGCACCATCCCTTTTCATGGTGGATGTTAGAAAGGCTGCTGGGGATACACTTGAATATCACAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17964227|gb|BM270965.1|BM270965
EST:     TTGAAGGCGTTTCTGCAAACAGGGTTGGACAATTTGCAGTGGTCTTGGAG                         GTGTTTGAAGTTGCGCCATCCCTTTTCATGGTTGATGTTCGGAAGGCCACT
genomic: TTGAAGGCGTTTCTGCAAACAGGGTTGGACAATTTGCAGTGGTCTTGGAGgtagtttgtt ... ttctcaaaagGTGTTTGAAGTTGCGCCATCCCTTTTCATGGTTGATGTTCGGAAGGCCACT
EST: gi|58019760|gb|CX706502.1|CX706502
EST:     TTGAAGGCGTTTCTGCAAACAGGGTTGGACAATTTGCAGTGGTCTTGGAG                         GTGTTTGAAGTTGCGCCATCCCTTTTCATGGTTGATGTTCGGAAGGCCACT
genomic: TTGAAGGCGTTTCTGCAAACAGGGTTGGACAATTTGCAGTGGTCTTGGAGgtagtttgtt ... ttctcaaaagGTGTTTGAAGTTGCGCCATCCCTTTTCATGGTTGATGTTCGGAAGGCCACT
EST: gi|57574558|gb|CX547533.1|CX547533
EST:     TTGAAGGCGTTTCTGCAAACAGGGTTGGACAATTTGCAGTGGTCTTGGAG                         GTGTTTGAAGTTGCGCCATCCCTTTTCATGGTTGATGTTCGGAAGGCCACT
genomic: TTGAAGGCGTTTCTGCAAACAGGGTTGGACAATTTGCAGTGGTCTTGGAGgtagtttgtt ... ttctcaaaagGTGTTTGAAGTTGCGCCATCCCTTTTCATGGTTGATGTTCGGAAGGCCACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagttctatttctgcttaagtcttggttaaaaccatcaatttattttctcaaaagGTGTTTGAAGTTGCGCCATCCCTTTTCATGGTTGATGTTCGGAAGGCCACTGGGGATACTTTTGACTACCACAAG
                                       tttattttctc  CT-rich tract
                          ttaaaaccatcaattt  TA-rich tract