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...tacccaacatttaattcgatcatgcagcgtcatatgcagacgtatttatatttgcatgcgtataaattgacagtaacatatagtatttgtacttttgcagTTTTACAAGAATTTTTGTGGCAAACTAGGAAACATTATTTGGAGACCGGCAGGGACTATGCCAAATTCTAATCTGCGCAAGCAAATGACTTTATAATCCA
species | Glycine max |
transcript | GLYMA17G12250.2 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TCATGGTTGATGTTCGGAAGGCCACTGGGGATACTTTTGACTACCACAAG TTTTACAAGAATTTTTGTGGCAAACTAGGAAACATTATTTGGAGACCGGCAEST: gi|58019760|gb|CX706502.1|CX706502
genomic: TCATGGTTGATGTTCGGAAGGCCACTGGGGATACTTTTGACTACCACAAGgttagcttca ... acttttgcagTTTTACAAGAATTTTTGTGGCAAACTAGGAAACATTATTTGGAGACCGGCA
EST: TCATGGTTGATGTTCGGAAGGCCACTGGGGATACTTTTGACTACCACAAG TTTTACAAGAATTTTTGTGGCAAACTAGGAAACATTATTTGGAGACCGGCAEST: gi|57574558|gb|CX547533.1|CX547533
genomic: TCATGGTTGATGTTCGGAAGGCCACTGGGGATACTTTTGACTACCACAAGgttagcttca ... acttttgcagTTTTACAAGAATTTTTGTGGCAAACTAGGAAACATTATTTGGAGACCGGCA
EST: TCATGGTTGATGTTCGGAAGGCCACTGGGGATACTTTTGACTACCACAAG TTTTACAAGAATTTTTGTGGCAAACTAGGAAACATTATTTGGAGACCGGCAEST: gi|22522182|gb|BU080993.1|BU080993
genomic: TCATGGTTGATGTTCGGAAGGCCACTGGGGATACTTTTGACTACCACAAGgttagcttca ... acttttgcagTTTTACAAGAATTTTTGTGGCAAACTAGGAAACATTATTTGGAGACCGGCA
EST: GTTCGGAAGGCCACTGGGGATACTTTTGACTACCACAAG TTTTACAAGAATTTTTGTGGCAAACTAGGAAACATTATTTGGAGACCGGCAEST: gi|7796569|gb|AW781966.1|AW781966
genomic: GTTCGGAAGGCCACTGGGGATACTTTTGACTACCACAAGgttagcttca ... acttttgcagTTTTACAAGAATTTTTGTGGCAAACTAGGAAACATTATTTGGAGACCGGCA
EST: TCATGGTTGATGTTCGGAAGGCCACTGGGGATACTTTTGACTACCACAAG TTTTACAAGAATTTTTGTGGCAAACTAGGAAACATTATTTGGAGACCGGCAEST: gi|31458208|gb|CD400236.1|CD400236
genomic: TCATGGTTGATGTTCGGAAGGCCACTGGGGATACTTTTGACTACCACAAGgttagcttca ... acttttgcagTTTTACAAGAATTTTTGTGGCAAACTAGGAAACATTATTTGGAGACCGGCA
EST: TCATGGTTGATGTTCGGAAGGCCACTGGGGATACTTTTGACTACCACAAG TTTTACAAGAATTTTTGTGGCAAACTAGGAAACATTATTTGGAGACCGGCA
genomic: TCATGGTTGATGTTCGGAAGGCCACTGGGGATACTTTTGACTACCACAAGgttagcttca ... acttttgcagTTTTACAAGAATTTTTGTGGCAAACTAGGAAACATTATTTGGAGACCGGCA
ttatatttgcatgcgtataaattgacagtaacatatagtatttgtacttttgcagTTTTACAAGAATTTTTGTGGCAAACTAGGAAACATTATTTGGAGACCGGCAGGGACTATGCCAAATTCTAATCTGCGCAAGCAAATGACTTTATAATCCA
cagtaac putative branch site (score: 2)
tactttt putative PPT
taacatatagtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacccaacatttaattcgatcatgcagcgtcatatgcagacgtatttatatttgcatgcgtataaattgacagtaacatatagtatttgtacttttgcagTTTTACAAGAATTTTTGTGGCAAACTAGGAAACATTATTTGGAGACCGGCAGGGACTATGCCAAATTCTAATCTGCGCAAGCAAATGACTTTATAATCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA