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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttagatatcctaatatgccaggaattataccatatttctttcttttctatttctcacattgttttcaaattttagGTTTTGGCTAGCCAGACCAAGATCTACATAATCCTTGAATTTGTAATGGGAGGGGAACTATATGATAAAATT

Basic information

species Glycine max
transcript GLYMA17G12250.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213603671|gb|DB962761.1|DB962761
EST:     TATCCATTATGAAGATTGTCAGGCATCCTAATATAGTTAGATTGCACGAG                         GTTTTGGCTAGCCAGACCAAGATCTACATAATCCTTGAAT
genomic: TATCCATTATGAAGATTGTCAGGCATCCTAATATAGTTAGATTGCACGAGgtatgtttag ... caaattttagGTTTTGGCTAGCCAGACCAAGATCTACATAATCCTTGAAT
EST: gi|209698841|gb|BW675769.1|BW675769
EST:     TATCCATTATGAAGATTGTCAGGCATCCTAATATAGTTAGATTGCACGAG                         GTTTTGGCTAGCCAGACCAAGATCTACATAATCC
genomic: TATCCATTATGAAGATTGTCAGGCATCCTAATATAGTTAGATTGCACGAGgtatgtttag ... caaattttagGTTTTGGCTAGCCAGACCAAGATCTACATAATCC
EST: gi|213594834|gb|DB959861.1|DB959861
EST:     TATCCATTATGAAGATTGTCAGGCATCCTAATATAGTTAGATTGCACGAG                         GTTTTGGCTAGCCAGACCAAGATCTACATAATCCTTGAATTTGTA
genomic: TATCCATTATGAAGATTGTCAGGCATCCTAATATAGTTAGATTGCACGAGgtatgtttag ... caaattttagGTTTTGGCTAGCCAGACCAAGATCTACATAATCCTTGAATTTGTA
EST: gi|151394038|gb|EV263909.1|EV263909
EST:     TATCCATTATGAAGATTGTCAGGCATCCTAATATAGTTAGATTGCACGAG                         GTTTTGGCTAGCCAGACCAAGATCTACATAATCCTTGAATTTGTAATGGGA
genomic: TATCCATTATGAAGATTGTCAGGCATCCTAATATAGTTAGATTGCACGAGgtatgtttag ... caaattttagGTTTTGGCTAGCCAGACCAAGATCTACATAATCCTTGAATTTGTAATGGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaattataccatatttctttcttttctatttctcacattgttttcaaattttagGTTTTGGCTAGCCAGACCAAGATCTACATAATCCTTGAATTTGTAATGGGAGGGGAACTATATGATAAAATT
                              ttctcac  putative branch site (score: 2)
            tatttctttcttttct  CT-rich tract
           atatttctttcttttc  TA-rich tract