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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTATACCATAAGGGCGGTGCCCTTCACTGACATCAGGTCCATCCGGAGGCATAATCCTGCTCTTGGGTGGCAATATGTCATTGTTGTTCTATCATCAGgtgaatttctgttgatgtaatagtggatttgttatttattatgttttttttaaatcattgttttgttctctatcggtctatcctgctttctataaaccag...

Basic information

species Glycine max
transcript GLYMA17G12070.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G12070.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv11s0016g05700.t01 (Vitis vinifera), 5'ss of exon 4
CTTTATACCATAAGGGCGGTGCCCTTCACTGACATCAGGTCCATCCGGAGGCATAATCCTGCTCTTGGGTGGCAATATGTCATTGTTGTTCTATCATCAGgtgaatttctgttgatgtaatagtggatttgttatttattatgttttttttaaatcattgttttgttctctatcggtctatcctgctttctataaaccag------
|| ||||| |||||||| ||||| || || ||  | ||||| || || ||||| | |||| | |||||||||||||| || ||||||||| ||||||||||| |       | |    |||  |     | | |  | ||  | | |   |   |    ||| || |  ||   |    ||| || | | |  |||  |       
CTATATACTATAAGGGCAGTGCCTTTTACGGATGTGAGGTCGATTCGCAGGCACACTCCTACACTTGGGTGGCAATACGTAATTGTTGTTTTATCATCAGgtaag-----atgggcaaaatgtttttaatataaaatgttgagatatggattgctatcagttatgattcctgaagtatgatcttg-tatgtgaaaattaaaatgag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192296060|gb|FG993408.1|FG993408
EST:     GCATAATCCTGCTCTTGGGTGGCAATATGTCATTGTTGTTCTATCATCAG                         GACCTTCTTATCCTCCATTATATTTTTATAGTGGAGGAGTCAAAGAATTCC
genomic: GCATAATCCTGCTCTTGGGTGGCAATATGTCATTGTTGTTCTATCATCAGgtgaatttct ... aattttgcagGACCTTCTTATCCTCCATTATATTTTTATAGTGGAGGAGTCAAAGAATTCC