1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...aaattgaaagtctggtaggtttaaccttgcctagagttatctaaaacatttatctataacacataattagaccggtaaatactattgattgacatttcagGGAGTTTGAGTACGAGAAAACAATGCGCTTGTGGGAAGTTTTATGGACACATTATCCGTCTGAGCATTTGCACCTGTATGTATGTGTGGCAATCTTGAAA
species | Glycine max |
transcript | GLYMA17G12070.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: TGCTTGAATTATTTCTTCTGTTTCCGCTGGATTTTGATTCAATTTAAAAG GGAGTTTGAGTACGAGAAAACAATGCGCTTGTGGGAAGTTTTATGGACACAEST: gi|9260051|gb|BE348198.1|BE348198
genomic: TGCTTGAATTATTTCTTCTGTTTCCGCTGGATTTTGATTCAATTTAAAAGgttagattcc ... gacatttcagGGAGTTTGAGTACGAGAAAACAATGCGCTTGTGGGAAGTTTTATGGACACA
EST: GCTTGAATTATTTCTTCTGTTTCCGCTGGATTTTGATTCAATTTANAAAG G-AGGTTGAGTACGAGAAAACAATGCGCTTGTGGGAAAGTGT-ATGGGCAEST: gi|16348998|gb|BI974593.1|BI974593
genomic: GCTTGAATTATTTCTTCTGTTTCCGCTGGATTTTGATTCAATTTA-AAAGgttagattcc ... gacatttcagGGAGTTTGAGTACGAGAAAACAATGCGCTTGTGGGAA-GTTTTATGGACA
EST: TGCTTGAATTATTTCTTCTGTTTCCGCTGGATTTTGATTCAATTTAAAAG GGAGTTTGAGTACGAGAAAACAATGCGCTTGTGGGAAGTTTTATGGACACAEST: gi|7591273|gb|AW707009.1|AW707009
genomic: TGCTTGAATTATTTCTTCTGTTTCCGCTGGATTTTGATTCAATTTAAAAGgttagattcc ... gacatttcagGGAGTTTGAGTACGAGAAAACAATGCGCTTGTGGGAAGTTTTATGGACACA
EST: TGCTTGAATTATTTCTTCTGTTTCCGCTGGATTTTGATTCAATTTAAAAG GGAGTTTGAGTACGAGAAAACAATGCGCTTGTGGGAAGTTTTATGGACACAEST: gi|17153534|gb|BM143467.1|BM143467
genomic: TGCTTGAATTATTTCTTCTGTTTCCGCTGGATTTTGATTCAATTTAAAAGgttagattcc ... gacatttcagGGAGTTTGAGTACGAGAAAACAATGCGCTTGTGGGAAGTTTTATGGACACA
EST: TGCTTGAATTATTTCTTCTGTTTCCGCTGGATTTTGATTCAATTTAAAAG GGAGTTTGAGTACGAGAAAACAATGCGCTTGTGGGAAGTTTTATGGACACA
genomic: TGCTTGAATTATTTCTTCTGTTTCCGCTGGATTTTGATTCAATTTAAAAGgttagattcc ... gacatttcagGGAGTTTGAGTACGAGAAAACAATGCGCTTGTGGGAAGTTTTATGGACACA
acatttatctataacacataattagaccggtaaatactattgattgacatttcagGGAGTTTGAGTACGAGAAAACAATGCGCTTGTGGGAAGTTTTATGGACACATTATCCGTCTGAGCATTTGCACCTGTATGTATGTGTGGCAATCTTGAAA
gattgac putative branch site (score: 3)
tataacacataatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaattgaaagtctggtaggtttaaccttgcctagagttatctaaaacatttatctataacacataattagaccggtaaatactattgattgacatttcagGGAGTTTGAGTACGAGAAAACAATGCGCTTGTGGGAAGTTTTATGGACACATTATCCGTCTGAGCATTTGCACCTGTATGTATGTGTGGCAATCTTGAAA
- - - - - - - - - - - - ccttgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacacat