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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCGCTTTCTATGAAGGCGATGATAATCCAAATGTAAATGTTCTGCGAGATATCCTGTTGACATATTCATTCTACAACTTTGATCTTGGTTATTGCCAGgtaactatgcagtggatcttagactgaattttatctgttgttaatatcatataattttgaacaccaaattttaatcttatccagatgttatgagctctct...

Basic information

species Glycine max
transcript GLYMA17G12070.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G12070.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os02g48000.2 (Oryza sativa), 5'ss of exon 12
ACTCGCTTTCTATGAAGGCGATGATAATCCAAATGTAAATGTTCTGCGAGATATCCTGTTGACATATTCATTCTACAACTTTGATCTTGGTTATTGCCAGgtaactatgcagtggatcttagactgaattt-tatctgttgttaatatcatataattttgaacaccaaattttaatcttatcca--gatgttatgagctctct
| |  | |  |||||||| ||||| |||| ||||||   ||| || || |||||||||||||| ||||| ||||| || || || ||||| |||||||| |||| | ||||     | |||  ||  |     |  | |    || ||||  | ||   ||| ||    |   | | | |  ||   | || |  | | ||  
AGTTCCATATTATGAAGGAGATGACAATCAAAATGTTCTTGTGCTACGGGATATCCTGTTGACGTATTCCTTCTATAATTTCGACCTTGGCTATTGCCAAgtaagtttgcacgttctattacccttcacccgcaattatc--caacatcagctgatgaagaaaactgcctgccagtttaagtcatttaagtgaaaaacactg-

upper sequence: GLYMA17G12070.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G156320_T01 (Zea mays), 5'ss of exon 10
-ACTCGCTTTCTATGAAGGCGATGATAATCCAAATGTAAATGTTCTGCGAGATATCCTGTTGACATATTCATTCTACAACTTTGATCTTGGTTATTGCCAGgtaactatgcagtggatcttagactgaattttatctgttgttaatatcatataattttgaacaccaaattttaatcttatccagatgttatgagctctct
 | || || | |||||||| ||||| ||||  |||||    ||| | || ||||| ||||| |||||||| |||||||| || || |||||||||||||| |||| | |    | |  |     |    |   ||   |    |   |  | | ||||        || |   ||    |   | |   | |  | | |||
CATTCCCTAT-TATGAAGGAGATGACAATCAGAATGTTGTAGTTTTACGTGATATTCTGTTAACATATTCCTTCTACAATTTCGACCTTGGTTATTGCCAAgtaagttttgtcttgcacagcatccatgtaaaattattcaaaagcttactgtcatttcagtgggaaactgggaacacaaagtatactatgtctgttgtct

upper sequence: GLYMA17G12070.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv11s0016g05700.t01 (Vitis vinifera), 5'ss of exon 13
ACTCGCTTTCTATGAAGGCGATGATAATCCAAATGTAAATGTTCTGCGAGATATCCTGTTGACATATTCATTCTACAACTTTGATCTTGGTTATTGCCAGgtaa---ctatgcagtggatcttagactgaattttatctgttgttaatatcatataattttgaacaccaaattttaatcttatccagatgttatgagctctct
 ||  ||||||| || || ||||| |||||||||||  || || | ||||| ||  || ||||||| ||||| ||||||||||| |||||||| || |||||||   ||    |||||   |        ||  |   ||||  | || |    | ||||     |   | |||  ||   |    ||| |||   |||    
GCTATCTTTCTACGATGGGGATGACAATCCAAATGTGTATCTTTTACGAGACATATTGCTGACATACTCATTTTACAACTTTGACCTTGGTTACTGTCAGgtaatgacttcttagtggcagtggcttcttatccttggtgtttctcatcttggtttattt-atttatttattttgtatgaaaaattgattttacttgctaa--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5509199|gb|AI855757.1|AI855757
EST:     ATATCCTGTTGACATATTCATTCTACAACTTTGATCTTGGTTATTGCCAG                         AGAATGAGTGATCATCTATCTACAATATTGTTTGTGATGGATAATGAATCA
genomic: ATATCCTGTTGACATATTCATTCTACAACTTTGATCTTGGTTATTGCCAGgtaactatgc ... tgttttacagGGAATGAGTGATCTTCTATCTCCAATATTGTTTGTGATGGATAATGAATCA
EST: gi|9260051|gb|BE348198.1|BE348198
EST:     ATATCCTGTTGACATATTCATTCTACAACTTTGATCTTGGTTATTGCCAG                         GGAATGAGTGATCTTCTATCTCCAATATTGTTTGTGATGGATAATGAATCA
genomic: ATATCCTGTTGACATATTCATTCTACAACTTTGATCTTGGTTATTGCCAGgtaactatgc ... tgttttacagGGAATGAGTGATCTTCTATCTCCAATATTGTTTGTGATGGATAATGAATCA
EST: gi|16348998|gb|BI974593.1|BI974593
EST:     ATATCCTGTTGACATATTCATTCTACAACTTTGATCTTGGTTATTGCCAG                         GGAATGAGTGATCTTCTATCTCCAATATTGTTTGTGATGGATAATGAATCA
genomic: ATATCCTGTTGACATATTCATTCTACAACTTTGATCTTGGTTATTGCCAGgtaactatgc ... tgttttacagGGAATGAGTGATCTTCTATCTCCAATATTGTTTGTGATGGATAATGAATCA
EST: gi|7591273|gb|AW707009.1|AW707009
EST:     ATATCCTGTTGACATATTCATTCTACAACTTTGATCTTGGTTATTGCCAG                         GGAATGAGTGATCTTCTATCTCCAATATTGTTTGTGATGGATAATGAATCA
genomic: ATATCCTGTTGACATATTCATTCTACAACTTTGATCTTGGTTATTGCCAGgtaactatgc ... tgttttacagGGAATGAGTGATCTTCTATCTCCAATATTGTTTGTGATGGATAATGAATCA
EST: gi|17153534|gb|BM143467.1|BM143467
EST:     ATATCCTGTTGACATATTCATTCTACAACTTTGATCTTGGTTATTGCCAG                         GGAATGAGTGATCTTCTATCTCCAATATTGTTTGTGATGGATAATGAATCA
genomic: ATATCCTGTTGACATATTCATTCTACAACTTTGATCTTGGTTATTGCCAGgtaactatgc ... tgttttacagGGAATGAGTGATCTTCTATCTCCAATATTGTTTGTGATGGATAATGAATCA