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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGGCATTTTGGTGTTTTGTTGCTCTAATGGAACGTCTCGGACCCAATTTTAATCGTGATCAAAACGGCATGCATTCTCAACTTTTTGCGCTATCTAAGgtttttctcttctttctcttctttacaagccactcacgttcaccacactgttaattttaatttttaattattaggttgtcattttttattggttaatttt...

Basic information

species Glycine max
transcript GLYMA17G12070.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G12070.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G156320_T01 (Zea mays), 5'ss of exon 11
AGAGGCATTTTGGTGTTTTGTTGCTCTAATGGAACGTCTCGGACCCAATTTTAATCGTGATCAAAACGGCATGCATTCTCAACTTTTTGCGCTATCTAAGgtttttctcttctttctcttctttacaagccactcacgttcaccacactgt-taattttaatttttaattattaggttgtcattttttattggttaatttt---
 ||  |||||||||| |||| | | || ||||||||||| ||  |||||||||||||||| || || ||||||||| |||| ||  ||||  |||| ||||| | |  | | ||  ||| |               |    |  |  | |  | || ||  |  ||    |||    | | || ||   | ||   ||||    
TGAATCATTTTGGTGCTTTGCTTCCCTGATGGAACGTCTAGGTGCCAATTTTAATCGTGACCAGAATGGCATGCATGCTCAGCTACTTGCATTATCCAAGgtatataacatattcatctgccaagtgctgagtgagcagctagtaagccgcatcatgttgctccttttccatt---ctctgatgttgcgt-ggcagatttcaaa

upper sequence: GLYMA17G12070.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv11s0016g05700.t01 (Vitis vinifera), 5'ss of exon 14
AGAGGCATTTTGGTGTTTTGTTGCTCTAATGGAACGTCTCGGACCCAATTTTAATCGTGATCAAAACGGCATGCATTCTCAACTTTTTGCGCTATCTAAGgtttttctcttctttctcttctttacaagc-cactcacgttcaccacactgttaattttaatttttaatta--ttaggttgtcattttttattggttaatttt
 ||  |||||||||||||||| ||||| |||||||| || || || || || ||||| || ||||| ||||||||  |||||||||||||| |||| ||||||| ||||| || |||||   | |||  | |||   |    | ||     |  || |  | |||  |  |  | |   ||        |||  |  |  |  
GGAATCATTTTGGTGTTTTGTGGCTCTGATGGAACGCCTTGGGCCAAACTTCAATCGAGACCAAAATGGCATGCACACTCAACTTTTTGCGATATCGAAGgtttatctct-ctctctctctctcacacacacacatgcacataacaggtcatgtatctagagtttacaccaaataaacatgcacacacatatgagacatct--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5509199|gb|AI855757.1|AI855757
EST:     TTAATCGTGATCAAAACGGCATGCATTCTCAACTTTTTGCGCTATCTAAG                         TTGGTGGAGCTGCTGGATAGTCCATTGCATAACTATTTTAAGCAGCGTGAC
genomic: TTAATCGTGATCAAAACGGCATGCATTCTCAACTTTTTGCGCTATCTAAGgtttttctct ... tttgttacagTTGGTGGAGCTGCTGGATAGTCCATTGCATAACTATTTTAAGCAGCGTGAC
EST: gi|9260051|gb|BE348198.1|BE348198
EST:     TTAATCGTGATCAAAACGGCATGCATTCTCAACTTTTTGCGCTATCTAAG                         TTGGTGGAGCTGCTGGATAGTCCATTGCATAACTATTTTAAGCAGCGTGAC
genomic: TTAATCGTGATCAAAACGGCATGCATTCTCAACTTTTTGCGCTATCTAAGgtttttctct ... tttgttacagTTGGTGGAGCTGCTGGATAGTCCATTGCATAACTATTTTAAGCAGCGTGAC
EST: gi|16348998|gb|BI974593.1|BI974593
EST:     TTAATCGTGATCAAAACGGCATGCATTCTCAACTTTTTGCGCTATCTAAG                         TTGGTGGAGCTGCTGGATAGTCCATTGCATAACTATTTTAAGCAGCGTGAC
genomic: TTAATCGTGATCAAAACGGCATGCATTCTCAACTTTTTGCGCTATCTAAGgtttttctct ... tttgttacagTTGGTGGAGCTGCTGGATAGTCCATTGCATAACTATTTTAAGCAGCGTGAC
EST: gi|7591273|gb|AW707009.1|AW707009
EST:     TTAATCGTGATCAAAACGGCATGCATTCTCAACTTTTTGCGCTATCTAAG                         TTGGTGGAGCTGCTGGATAGTCCATTGCATAACTATTTTAAGCAGCGTGAC
genomic: TTAATCGTGATCAAAACGGCATGCATTCTCAACTTTTTGCGCTATCTAAGgtttttctct ... tttgttacagTTGGTGGAGCTGCTGGATAGTCCATTGCATAACTATTTTAAGCAGCGTGAC
EST: gi|17153534|gb|BM143467.1|BM143467
EST:     TTAATCGTGATCAAAACGGCATGCATTCTCAACTTTTTGCGCTATCTAAG                         TTGGTGGAGCTGCTGGATAGTCCATTGCATAACTATTTTAAGCAGCGTGAC
genomic: TTAATCGTGATCAAAACGGCATGCATTCTCAACTTTTTGCGCTATCTAAGgtttttctct ... tttgttacagTTGGTGGAGCTGCTGGATAGTCCATTGCATAACTATTTTAAGCAGCGTGAC