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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTTCTCATAGTTTTCAGTTTTCTGCGAAATCGCCGATGCTAGAATCGGAGCTTCACGATTTATCCGATGACGCCGATTACGCCGCGTCGCAGCAACAAgtaagagtgtctcccttttttcacttcgtaatttccagtgaccttttggttccttcgagcaaattgcgtgtcaattagggtttccgcgattcaattgaatactccaaccttgtactttttttaatatttaatttaactgactttgcgattattattattgggattag

Basic information

species Glycine max
transcript GLYMA17G12070.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G12070.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv11s0016g05700.t01 (Vitis vinifera), 5'ss of exon 1
TCTTTCTCATAGTTTTCAGTTTTCTGCGAA-ATCGCCGATGCTAGAATCGGAGCTTCACGATTTATCCGATGACGCCGATTACGCCGCGTCGCAGCAACAAgtaagagtgtctcccttttttcacttcgtaatttccagtgaccttttggttccttcgagcaaattgcgtgtcaattagggtttccgcgattcaattgaatactccaaccttgtactttttttaatatttaatttaactgactttgcgattattattattgggattag
  | ||||    ||| | || | |  | |  | || |||||| |||| |||||||||||||||| ||||| ||||||||||| ||||| || || |  ||||||||    |||||  |     | |||  | || | | |    |||||| |     || ||| |    | |  ||||    |||     ||  |||    |   ||   |||  |                                                    
-TTCTCTCCCCATTTGCTGTCTCCGCCAATCACCGACGATGCAAGAAGCGGAGCTTCACGATTTGTCCGACGACGCCGATTATGCCGCCTCACAACTTCAAgtaagca-atctccgat-----aattctcatttccaattcggtttttggat-----gaacaattattttat--attatttgttcatatttttcattaggaatcgca--tttgatc----------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13481678|gb|BG511021.1|BG511021
EST:     AGCTTCACGATTTATCCGATGACGCCGATTACGCCGCGTCGCAGCAACAA                         GGATCTGCTAGCGTGATGTTGCGGAGTGACAGTGCCAAACAGAGTTCCCCT
genomic: AGCTTCACGATTTATCCGATGACGCCGATTACGCCGCGTCGCAGCAACAAgtaagagtgt ... ttgggattagGGATCTGCTAGCGTGATGTTGCGGAGTGACAGTGCCAAACAGAGTTCCCCT
EST: gi|193398852|gb|FK362562.1|FK362562
EST:     AGCTTCACGATTTATCCGATGACGCCGATTACGCCGCGTCGCAGCAACAA                         GGATCTGCTAGCGTGATGTTGCGGAGTGACAGTGCCAAACAGAGTT
genomic: AGCTTCACGATTTATCCGATGACGCCGATTACGCCGCGTCGCAGCAACAAgtaagagtgt ... ttgggattagGGATCTGCTAGCGTGATGTTGCGGAGTGACAGTGCCAAACAGAGTT