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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtttacattctggacgactttactgccttgtgcaacaatatgttctatatgctgaattttgttctgttttcttgtttagACAGAAACCTTTATACCATAAGGGCGGTGCCCTTCACTGACATCAGGTCCATCCGGAGGCATAATCCTGCTCTTGGGTGGCAATATGTCATTGTTGTTCT

Basic information

species Glycine max
transcript GLYMA17G12070.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13481678|gb|BG511021.1|BG511021
EST:     TTGGATACCTTACAAAGCGCATAGCTCAGAGGCCAGGCTGTCTGATAAAG                         ACAGAAACCTTTATACCATAAGGG
genomic: TTGGATACCTTACAAAGCGCATAGCTCAGAGGCCAGGCTGTCTGATAAAGgtagtttaca ... tcttgtttagACAGAAACCTTTATACCATAAGGG
EST: gi|192296060|gb|FG993408.1|FG993408
EST:     TTGGATACCTTACAAAGCGCATAGCTCAGAGGCCAGGCTGTCTGAT--A-                         A-AGAAACCTTTATACCATAAGGGCGGTGCCCTTCACTGACATCAGGTCCA
genomic: TTGGATACCTTACAAAGCGCATAGCTCAGAGGCCAGGCTGTCTGATAAAGgtagtttaca ... tcttgtttagACAGAAACCTTTATACCATAAGGGCGGTGCCCTTCACTGACATCAGGTCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gccttgtgcaacaatatgttctatatgctgaattttgttctgttttcttgtttagACAGAAACCTTTATACCATAAGGGCGGTGCCCTTCACTGACATCAGGTCCATCCGGAGGCATAATCCTGCTCTTGGGTGGCAATATGTCATTGTTGTTCT
                                ttttgttctgttttct  CT-rich tract
            aatatgttctatat  TA-rich tract