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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagtgtctcccttttttcacttcgtaatttccagtgaccttttggttccttcgagcaaattgcgtgtcaattagggtttccgcgattcaattgaatactccaaccttgtactttttttaatatttaatttaactgactttgcgattattattattgggattagGGATCTGCTAGCGTGATGTTGCGGAGTGACAGTGCCAAACAGAGTTCCCCTCGGAACGGTGCTGAAATTGTATTTTCGAAGGACAATGTTGCAATTCATC

Basic information

species Glycine max
transcript GLYMA17G12070.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13481678|gb|BG511021.1|BG511021
EST:     AGCTTCACGATTTATCCGATGACGCCGATTACGCCGCGTCGCAGCAACAA                         GGATCTGCTAGCGTGATGTTGCGGAGTGACAGTGCCAAACAGAGTTCCCCT
genomic: AGCTTCACGATTTATCCGATGACGCCGATTACGCCGCGTCGCAGCAACAAgtaagagtgt ... ttgggattagGGATCTGCTAGCGTGATGTTGCGGAGTGACAGTGCCAAACAGAGTTCCCCT
EST: gi|193398852|gb|FK362562.1|FK362562
EST:     AGCTTCACGATTTATCCGATGACGCCGATTACGCCGCGTCGCAGCAACAA                         GGATCTGCTAGCGTGATGTTGCGGAGTGACAGTGCCAAACAGAGTT
genomic: AGCTTCACGATTTATCCGATGACGCCGATTACGCCGCGTCGCAGCAACAAgtaagagtgt ... ttgggattagGGATCTGCTAGCGTGATGTTGCGGAGTGACAGTGCCAAACAGAGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactttttttaatatttaatttaactgactttgcgattattattattgggattagGGATCTGCTAGCGTGATGTTGCGGAGTGACAGTGCCAAACAGAGTTCCCCTCGGAACGGTGCTGAAATTGTATTTTCGAAGGACAATGTTGCAATTCATC
                      aactgac  putative branch site (score: 2)
 tttttaatatttaatt  TA-rich tract