1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GTTTCGAGAATGAGCCTCTGGAATTATGGAATTGATATTATGGATGCGCTGCTGGAACTCATAATATCTTTGgtacttgatcattttgcaccacccctggatttgtaatatagagccaatcgtgaatttttgttaagtttgctgtcaatgtatttttctgcag
species | Glycine max |
transcript | GLYMA16G21590.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTGGAACTCATAATATCTTTG GCTGCTTCCAATGGAAAATACATCGATTGGTGTTTGGAGATGCTTGTGAAAEST: gi|254328245|gb|GR835210.1|GR835210
genomic: CTGGAACTCATAATATCTTTGgtacttgatc ... ttttctgcagGCTGCTTCCAATGGAAAATACATCGATTGGTGTTTGGAGATGCTTGTGAAA
EST: ATTATGGAATTGATATTATGGATGCGCTGCTGGAACTCATAATATCTTTG GCTGCTTCCAATGGAAAATACATCGATTGGTGTTTGGAGATGCTTGTGAAAEST: gi|213599292|gb|DB960032.1|DB960032
genomic: ATTATGGAATTGATATTATGGATGCGCTGCTGGAACTCATAATATCTTTGgtacttgatc ... ttttctgcagGCTGCTTCCAATGGAAAATACATCGATTGGTGTTTGGAGATGCTTGTGAAA
EST: ATTATGGAATTGATATTATGGATGCGCTGCTGGAACTCATAATATCTTTG GCTGCTTCCAATGGAAAATACATCGATTGGTGTTTGGAGATGCTTGTGAAEST: gi|7926611|gb|AW832637.1|AW832637
genomic: ATTATGGAATTGATATTATGGATGCGCTGCTGGAACTCATAATATCTTTGgtacttgatc ... ttttctgcagGCTGCTTCCAATGGAAAATACATCGATTGGTGTTTGGAGATGCTTGTGAA
EST: ATTATGGAATTGATATTATGGATGCGCTGCTGGAACTCATTATATCTTTG GCTGCTTTCAATGGAAAATACATCGATTGGTGTTTGGAGATGCTTGTGAAAEST: gi|213590176|gb|DB963795.1|DB963795
genomic: ATTATGGAATTGATATTATGGATGCGCTGCTGGAACTCATAATATCTTTGgtacttgatc ... ttttctgcagGCTGCTTCCAATGGAAAATACATCGATTGGTGTTTGGAGATGCTTGTGAAA
EST: ATTATGGAATTGATATTATGGATGCGCTGCTGGAACTCATAATATCTTTG GCTGCTTCCAATGGAAAATACATCGATTGGTGTTTGGAGATGC
genomic: ATTATGGAATTGATATTATGGATGCGCTGCTGGAACTCATAATATCTTTGgtacttgatc ... ttttctgcagGCTGCTTCCAATGGAAAATACATCGATTGGTGTTTGGAGATGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTCGAGAATGAGCCTCTGGAATTATGGAATTGATATTATGGATGCGCTGCTGGAACTCATAATATCTTTGgtacttgatcattttgcaccacccctggatttgtaatatagagccaatcgtgaatttttgttaagtttgctgtcaatgtatttttctgcag
- - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA