1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
ATGATATGCTTGAGTCTGATCTTTCCAAGGCTTTTGGCGGGATTGATAGACTTGACATGTTTTTCCCATTTGATCCATGTTTGTTGAAGAAAAGTGAAAGgcaagtgttattcaactaaatttgtttgatttgacattaacattttattgaattaaattttatgcttatgttgctttttgttcaccacaacaactctcaatgtggactgtcttcag
species | Glycine max |
transcript | GLYMA16G21590.2 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: CTTGACATGTTTTTCCCATTTGATCCATGTTTGTTGAAGAAAAGTGAAAG CTACATAAGGCCACATTTTGTTCGCTGGTCAAAAGTCAGAACTACATATGAEST: gi|193307271|gb|FK272441.1|FK272441
genomic: CTTGACATGTTTTTCCCATTTGATCCATGTTTGTTGAAGAAAAGTGAAAGgcaagtgtta ... ctgtcttcagCTACATAAGGCCACATTTTGTTCGCTGGTCAAAAGTCAGAACTACATATGA
EST: CTTGACATGTTTTTCCCATTTGATCCATGTTTGTTGAAGAAAAGTGAAAG CTACATAAGGCCACATTTTGTTCGCTGGTCAAAAGTCAGAACTACATATGAEST: gi|254328246|gb|GR835211.1|GR835211
genomic: CTTGACATGTTTTTCCCATTTGATCCATGTTTGTTGAAGAAAAGTGAAAGgcaagtgtta ... ctgtcttcagCTACATAAGGCCACATTTTGTTCGCTGGTCAAAAGTCAGAACTACATATGA
EST: CTTGACATGTTTTTCCCATTTGATCCATGTTTGTTGAAGAAAAGTGAAAG CTACATAAGGCCACATTTTGTTCGCTGGTCAAAAGTCAGAACTACATATGAEST: gi|208140828|gb|GD935226.1|GD935226
genomic: CTTGACATGTTTTTCCCATTTGATCCATGTTTGTTGAAGAAAAGTGAAAGgcaagtgtta ... ctgtcttcagCTACATAAGGCCACATTTTGTTCGCTGGTCAAAAGTCAGAACTACATATGA
EST: TGACATTGTTTTTCCCTATTTGATCCATGTTTGTTGAAG-AAAGTGAAAG CTACATAAGGCCACATTTTGTTCGCTGGTCAAAAGTCAGAACTACATATGAEST: gi|14991324|gb|BI316997.1|BI316997
genomic: TGACA-TGTTTTTCCC-ATTTGATCCATGTTTGTTGAAGAAAAGTGAAAGgcaagtgtta ... ctgtcttcagCTACATAAGGCCACATTTTGTTCGCTGGTCAAAAGTCAGAACTACATATGA
EST: CTTGACATGTTTTTCCCATTTGATCCATGTTTGTTGAAGAAAAGTGAAAG CTACATAAGGCCACATTTTGTTCGCTGGTCAAAAGTCAGAACTACATATGAEST: gi|58021598|gb|CX708339.1|CX708339
genomic: CTTGACATGTTTTTCCCATTTGATCCATGTTTGTTGAAGAAAAGTGAAAGgcaagtgtta ... ctgtcttcagCTACATAAGGCCACATTTTGTTCGCTGGTCAAAAGTCAGAACTACATATGA
EST: CTGGACATGTTTTTCCCATTTGATCCATGTTTGTTGAAGAAAAGTGAAAG CTACATAAGGCCACATTTTGTTCGCTGGTCAAAAGTCAGAACTACATATGA
genomic: CTTGACATGTTTTTCCCATTTGATCCATGTTTGTTGAAGAAAAGTGAAAGgcaagtgtta ... ctgtcttcagCTACATAAGGCCACATTTTGTTCGCTGGTCAAAAGTCAGAACTACATATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGATATGCTTGAGTCTGATCTTTCCAAGGCTTTTGGCGGGATTGATAGACTTGACATGTTTTTCCCATTTGATCCATGTTTGTTGAAGAAAAGTGAAAGgcaagtgttattcaactaaatttgtttgatttgacattaacattttattgaattaaattttatgcttatgttgctttttgttcaccacaacaactctcaatgtggactgtcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA