Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catttgatgggtgaagactgtttgaactttttctattacaacgttgtgctgcttttgtctgaaacaaatacttggagattgatgtaaacttttctaccagGTGTGTTTGCCTACTGTAGTAGTGGAATTTCTTAGACAGGCAAAGGCTGCTCAACTTTTCATGGCGTCAGAGTCATTTGTTTTTGATGATATGCTTGAGT

Basic information

species Glycine max
transcript GLYMA16G21590.2
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15199487|gb|BI423855.1|BI423855
EST:     TTAATATGCCCATGGAGGCAATCTTGAAACATAAATTGAGTCCCTTGAAG                         GTGTGTTTGCCTACTGTAGTAGTGGAA
genomic: TTAATATGCCCATGGAGGCAATCTTGAAACATAAATTGAGTCCCTTGAAGgtaacgaact ... tttctaccagGTGTGTTTGCCTACTGTAGTAGTGGAA
EST: gi|14991324|gb|BI316997.1|BI316997
EST:     TTAATATGCCCATGGAGGCAATCTTGAAACATAAATTGAGTCCCTTGAAG                         GTGTGTTTGCCTACTGTAGTAGTGGAATTTCTTAGACAGGCAAAGGCTGCT
genomic: TTAATATGCCCATGGAGGCAATCTTGAAACATAAATTGAGTCCCTTGAAGgtaacgaact ... tttctaccagGTGTGTTTGCCTACTGTAGTAGTGGAATTTCTTAGACAGGCAAAGGCTGCT
EST: gi|10843968|gb|BF070884.1|BF070884
EST:     TTAATATGCCCATGGAGGCAATCTTGAAACATAAATTGAGTCCCTTGAAG                         GTGTGTTTGCCTACTGTAGTAGTGGAATTTCTTAGACAGGCAAAGGCTGCT
genomic: TTAATATGCCCATGGAGGCAATCTTGAAACATAAATTGAGTCCCTTGAAGgtaacgaact ... tttctaccagGTGTGTTTGCCTACTGTAGTAGTGGAATTTCTTAGACAGGCAAAGGCTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgctgcttttgtctgaaacaaatacttggagattgatgtaaacttttctaccagGTGTGTTTGCCTACTGTAGTAGTGGAATTTCTTAGACAGGCAAAGGCTGCTCAACTTTTCATGGCGTCAGAGTCATTTGTTTTTGATGATATGCTTGAGT
                               gattgat  putative branch site (score: 4)
                                           cttttctacc  putative PPT
                aaacaaata  TA-rich tract