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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCAGGGCTCATTAAACTGTCAACTTACTCCAGCTTTAGTCTATTTGAATGTCGTAAAGTTGTTACTGGCTCCAAAGCACCTGATCTTGGGAATGGCATgtcttttttcctctccttgtttttgttatattataatcaag

Basic information

species Glycine max
transcript GLYMA16G21340.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G21340.1 (Glycine max), 5'ss of exon 9
lower sequence: AT5G65930.1 (Arabidopsis thaliana), 5'ss of exon 4
-TTGCAGGGCTCATTAAACTGTCAACTTACTCCAGCTTTAGTCTATTTGAATGTCGTAAAGTTGTTACTGGCTCCAAAGCACCTGATCTTGGGAATGGCATgtcttttttcctct--ccttgtttt-tgttatattataatcaag-----------------------------------
 | || ||    |||||||| ||| ||| ||| ||||||||| | ||||||||||||||||||||| |  | || ||| || ||||||  || ||||| |||  ||  |    ||  | | ||  | | || |    ||||  |                                    
CTAGCTGGAACAATTAAACTATCAGCTTTCTCTAGCTTTAGTTTGTTTGAATGTCGTAAAGTTGTTTCAAGTTCTAAATCATCTGATCCCGGAAATGgtatgctttcatatgactggcttcgtcatatattgtgaagtaatacaacattatcgatcatttttctatctgtgcacttgcag

upper sequence: GLYMA16G21340.1 (Glycine max), 5'ss of exon 9
lower sequence: AT5G65930.3 (Arabidopsis thaliana), 5'ss of exon 4
----TTGCAGGGCTCATTAAACTGTCAACTTACTCCAGCTTTAGTCTATTTGAATGTCGTAAAGTTGTTACTGGCTCCAAAGCACCTGATCTTGGGAATGGCATgtcttttttcctct--ccttgtttt-tgttatattataatcaag-----------------------------------
    | || ||    |||||||| ||| ||| ||| ||||||||| | ||||||||||||||||||||| |  | || ||| || ||||||  || ||||| |||  ||  |    ||  | | ||  | | || |    ||||  |                                    
GAGCTAGCTGGAACAATTAAACTATCAGCTTTCTCTAGCTTTAGTTTGTTTGAATGTCGTAAAGTTGTTTCAAGTTCTAAATCATCTGATCCCGGAAATGgtatgctttcatatgactggcttcgtcatatattgtgaagtaatacaacattatcgatcatttttctatctgtgcacttgcag