1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' |
...cagggaaaaatgtttcttcattgttaagcaacaatgtggaacattgattgtttcttgagctcgtggtgcgtgcttattttatcttggattcaatatgcagCTAAGTTTTGTGGATCTTGCTGGTTCAGAAAGAGTGAAAAAGTCAGGTTCTACCGGGAGTCAGCTTAAGGAAGCTCAGAGCATTAACAAGTCATTATCAG
species | Glycine max |
transcript | GLYMA16G21340.1 |
intron # | 25 |
splice site | 3' |
intron type | U2 |
EST: CTTCAAAGTCAGTCAGTTGCAAAAGGAAAG NNNAGTTTTGTGGATCTTNNTGGTTCAGAAAGAGTGAAAAAGTCAGGTNCTEST: gi|13311402|gb|BG405053.1|BG405053
genomic: CTTCAAAGTCAGTCAGTTGCAAAAGGAAAGgtatatttta ... caatatgcagCTAAGTTTTGTGGATCTTGCTGGTTCAGAAAGAGTGAAAAAGTCAGGTTCT
EST: TTGTAATTGAAAGTACCAACCTTCAAAGTCAGTCAGTTGCAAAAGGAAAG CTAAGTTTTGTGGATCTTGCTGGTTCAGAAAGAGTGAAAAAGTCAGGTTCTEST: gi|193325713|gb|FK292677.1|FK292677
genomic: TTGTAATTGAAAGTACCAACCTTCAAAGTCAGTCAGTTGCAAAAGGAAAGgtatatttta ... caatatgcagCTAAGTTTTGTGGATCTTGCTGGTTCAGAAAGAGTGAAAAAGTCAGGTTCT
EST: TTGTAATTGAAAGTACCAACCTTCAAAGTCAGTCAGTTGCAAAAGGAAAG CTAAGTTTTGTGGATCTTGCTGGTTCAGAAAGAGTGAAAAAGTCAGGTTCTEST: gi|192306729|gb|FG998869.1|FG998869
genomic: TTGTAATTGAAAGTACCAACCTTCAAAGTCAGTCAGTTGCAAAAGGAAAGgtatatttta ... caatatgcagCTAAGTTTTGTGGATCTTGCTGGTTCAGAAAGAGTGAAAAAGTCAGGTTCT
EST: TTGTAATTGAAAGTACCAACCTTCAAAGTCAGTCAGTTGCAAAAGGAAAG CTAAGTTTTGTGGATCTTGCTGGTTCAGAAAGAGTGAAAAAGTCAGGTTCTEST: gi|13311367|gb|BG405018.1|BG405018
genomic: TTGTAATTGAAAGTACCAACCTTCAAAGTCAGTCAGTTGCAAAAGGAAAGgtatatttta ... caatatgcagCTAAGTTTTGTGGATCTTGCTGGTTCAGAAAGAGTGAAAAAGTCAGGTTCT
EST: TTGTAATTGAAAGTACCAACCTTCAAAGTCAGTCAGTTGCAAAAGGAAAG CTAAGTTTTGTGGATCTTGCTGGTTCAGAAAGAGTGAAAAAGTCAGGTTCTEST: gi|51336428|gb|CO980294.1|CO980294
genomic: TTGTAATTGAAAGTACCAACCTTCAAAGTCAGTCAGTTGCAAAAGGAAAGgtatatttta ... caatatgcagCTAAGTTTTGTGGATCTTGCTGGTTCAGAAAGAGTGAAAAAGTCAGGTTCT
EST: TTGTAATTGAAAGTACCAACCTTCAAAGTCAGTCAGTTGCAAAAGGAAAG CTAAGTTTTGTGGATCTTGCTGGTTCAGAAAGAGTGAAAAAGTCAGGTTCT
genomic: TTGTAATTGAAAGTACCAACCTTCAAAGTCAGTCAGTTGCAAAAGGAAAGgtatatttta ... caatatgcagCTAAGTTTTGTGGATCTTGCTGGTTCAGAAAGAGTGAAAAAGTCAGGTTCT
gattgtttcttgagctcgtggtgcgtgcttattttatcttggattcaatatgcagCTAAGTTTTGTGGATCTTGCTGGTTCAGAAAGAGTGAAAAAGTCAGGTTCTACCGGGAGTCAGCTTAAGGAAGCTCAGAGCATTAACAAGTCATTATCAG
cattgat putative branch site (score: 4)
ttattttatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagggaaaaatgtttcttcattgttaagcaacaatgtggaacattgattgtttcttgagctcgtggtgcgtgcttattttatcttggattcaatatgcagCTAAGTTTTGTGGATCTTGCTGGTTCAGAAAGAGTGAAAAAGTCAGGTTCTACCGGGAGTCAGCTTAAGGAAGCTCAGAGCATTAACAAGTCATTATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - gaaaaat
- - - - - - - -cttcatt
- - - - - - - - - - - - - - - -caatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctcgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcgtgc