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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTAATGAGTGATTCACTTGGTGGTAATGCCAAAACTCTCATGTTTGTGAATGTTGCTCCCACAGAATCAAATTTGGATGAGACAAATAACTCTCTCATgtatgttctttcttattttctttcattattaatgttgagatttcacatcaactagcgatataaccaatgtgtctttgtagggattacattgaccttatcttttttatgtgagatctaaacaattgacttgaaagtgtctctcttgttctaacatcattcatctttgttatttag

Basic information

species Glycine max
transcript GLYMA16G21340.1
intron # 26
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G21340.1 (Glycine max), 5'ss of exon 26
lower sequence: Vv04s0044g02020.t01 (Vitis vinifera), 5'ss of exon 22
TGTTAATGAGTGATTCACTTGGTGGTAATGCCAAAACTCTCATGTTTGTGAATGTTGCTCCCACAGAATCAAATTTGGATGAGACAAATAACTCTCTCATgtatgttctttcttattttctttcattattaatgttgagatttcacatcaactagcgatataaccaatgtgtctttgtagggattacattgaccttatcttttttatgtgagatctaaacaattgacttgaaagtgtctctcttgttctaacatcattcatctttgttatttag
|||| |||||||||||||||||||| |||||||||||||| ||||| || ||  |  ||||  | |||||||| |||||||| ||  | || ||| | | ||||||  | |  ||| |   ||   | |   |||| | || |||||  || |||   |||  || | ||| |  |      | |  |   || | |  ||  |                                                                      
TGTTGATGAGTGATTCACTTGGTGGCAATGCCAAAACTCTTATGTTCGTAAACATATCTCCAGCTGAATCAAACTTGGATGAAACTTACAATTCTTTGACgtatgtgttcttctatctctgttatatttctttgttta-atgtcacag-aattagt--tatttcctaggtgacacttagacaactcaaaacacttgaagttgct----------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192306730|gb|FG998870.1|FG998870
EST:     AATGTTGCTCCCACAGAATCAAATTTGGATGAGACAAATAACTCTCTCAT                         GTATGCCTCACGAGTGAGATCCATTGTGAATGACCCCAACAAAAATGTTTC
genomic: AATGTTGCTCCCACAGAATCAAATTTGGATGAGACAAATAACTCTCTCATgtatgttctt ... tgttatttagGTATGCCTCACGAGTGAGATCCATTGTGAATGACCCCAACAAAAATGTTTC
EST: gi|9203274|gb|BE329498.1|BE329498
EST:     AATGTTGCTCCCACAGAATCAAATTTGGATGAGACAAATAACTCTCTCAT                         GTATGCCTCACGAGTGAGATCCATTGTGAATGACCCCAACAAAAATGTTTC
genomic: AATGTTGCTCCCACAGAATCAAATTTGGATGAGACAAATAACTCTCTCATgtatgttctt ... tgttatttagGTATGCCTCACGAGTGAGATCCATTGTGAATGACCCCAACAAAAATGTTTC
EST: gi|27425093|gb|CA936613.1|CA936613
EST:     AATGTTGCTCCCACAGAATCAAATTTGGATGAGACAAATAACTCTCTCAT                         GTATGCCTCACGAGTGAGATCCATTGTGAATGACCCCAACAAAAATGTTTC
genomic: AATGTTGCTCCCACAGAATCAAATTTGGATGAGACAAATAACTCTCTCATgtatgttctt ... tgttatttagGTATGCCTCACGAGTGAGATCCATTGTGAATGACCCCAACAAAAATGTTTC
EST: gi|10253068|gb|BE820834.1|BE820834
EST:     AATGTTGCTCCCACAGAATCAAATTTGGATGAGACAAATAACTCTCTCAT                         GTATGCCTCACGAGTGAGATCCATTGTGAATGACCCCAACAAAAATGTTTC
genomic: AATGTTGCTCCCACAGAATCAAATTTGGATGAGACAAATAACTCTCTCATgtatgttctt ... tgttatttagGTATGCCTCACGAGTGAGATCCATTGTGAATGACCCCAACAAAAATGTTTC
EST: gi|15815514|gb|BI787789.1|BI787789
EST:     ATGTTGCTCCCACAGAATCAAATTTGGGATGGGACAAATAACTCTCTCAT                         GTATGCCTCACGAGTGAGATCCATTGTGAATGACCCCAACAAAAATGTTTC
genomic: ATGTTGCTCCCACAGAATCAAATTT-GGATGAGACAAATAACTCTCTCATgtatgttctt ... tgttatttagGTATGCCTCACGAGTGAGATCCATTGTGAATGACCCCAACAAAAATGTTTC
EST: gi|13311402|gb|BG405053.1|BG405053
EST:     AATGTTTCTCCCGCAGAATCAAATTTGGATGAGACAAATAACTCTCTCAT                         GTATGCCTCACGAGTGAGATCCATTGTGAATGACCCCAACAAAAATGTTTC
genomic: AATGTTGCTCCCACAGAATCAAATTTGGATGAGACAAATAACTCTCTCATgtatgttctt ... tgttatttagGTATGCCTCACGAGTGAGATCCATTGTGAATGACCCCAACAAAAATGTTTC
EST: gi|193605741|gb|FK555571.1|FK555571
EST:     AATGTTGCTCCCACAGAATCAAATTTGGATGAGACAAATAACTCTCTCAT                         GTATGCCTCACGAGTGAGATCCATTGTGAATGACCCCAACAAAAATGTTTC
genomic: AATGTTGCTCCCACAGAATCAAATTTGGATGAGACAAATAACTCTCTCATgtatgttctt ... tgttatttagGTATGCCTCACGAGTGAGATCCATTGTGAATGACCCCAACAAAAATGTTTC
EST: gi|27424012|gb|CA935532.1|CA935532
EST:     ATGTNTGCTCCCACAGAATCAAATTTGGATGAGACAAATAACTCTCTCAT                         GTATGCCTCACGAGTGAGATCCATTGTGAATGACCCCAACAAAAATGTTTC
genomic: ATGT-TGCTCCCACAGAATCAAATTTGGATGAGACAAATAACTCTCTCATgtatgttctt ... tgttatttagGTATGCCTCACGAGTGAGATCCATTGTGAATGACCCCAACAAAAATGTTTC
EST: gi|51336428|gb|CO980294.1|CO980294
EST:     AATGTTGCTCCCACAGAATCAAATTTGGATGAGACAAATAACTCTCTCAT                         GTATGCCTCACGAGTGAGATCCATTGTGAATGACCCCAACAAAAATGTTTC
genomic: AATGTTGCTCCCACAGAATCAAATTTGGATGAGACAAATAACTCTCTCATgtatgttctt ... tgttatttagGTATGCCTCACGAGTGAGATCCATTGTGAATGACCCCAACAAAAATGTTTC