1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' |
gtatgttctttcttattttctttcattattaatgttgagatttcacatcaactagcgatataaccaatgtgtctttgtagggattacattgaccttatcttttttatgtgagatctaaacaattgacttgaaagtgtctctcttgttctaacatcattcatctttgttatttagGTATGCCTCACGAGTGAGATCCATTGTGAATGACCCCAACAAAAATGTTTCCTCAAAAGAGGTAGCACGGCTGAAGAAGTTGGTTGCATATTGGAAACAA
species | Glycine max |
transcript | GLYMA16G21340.1 |
intron # | 26 |
splice site | 3' |
intron type | U2 |
EST: AATGTTGCTCCCACAGAATCAAATTTGGATGAGACAAATAACTCTCTCAT GTATGCCTCACGAGTGAGATCCATTGTGAATGACCCCAACAAAAATGTTTCEST: gi|9203274|gb|BE329498.1|BE329498
genomic: AATGTTGCTCCCACAGAATCAAATTTGGATGAGACAAATAACTCTCTCATgtatgttctt ... tgttatttagGTATGCCTCACGAGTGAGATCCATTGTGAATGACCCCAACAAAAATGTTTC
EST: AATGTTGCTCCCACAGAATCAAATTTGGATGAGACAAATAACTCTCTCAT GTATGCCTCACGAGTGAGATCCATTGTGAATGACCCCAACAAAAATGTTTCEST: gi|27425093|gb|CA936613.1|CA936613
genomic: AATGTTGCTCCCACAGAATCAAATTTGGATGAGACAAATAACTCTCTCATgtatgttctt ... tgttatttagGTATGCCTCACGAGTGAGATCCATTGTGAATGACCCCAACAAAAATGTTTC
EST: AATGTTGCTCCCACAGAATCAAATTTGGATGAGACAAATAACTCTCTCAT GTATGCCTCACGAGTGAGATCCATTGTGAATGACCCCAACAAAAATGTTTCEST: gi|10253068|gb|BE820834.1|BE820834
genomic: AATGTTGCTCCCACAGAATCAAATTTGGATGAGACAAATAACTCTCTCATgtatgttctt ... tgttatttagGTATGCCTCACGAGTGAGATCCATTGTGAATGACCCCAACAAAAATGTTTC
EST: AATGTTGCTCCCACAGAATCAAATTTGGATGAGACAAATAACTCTCTCAT GTATGCCTCACGAGTGAGATCCATTGTGAATGACCCCAACAAAAATGTTTCEST: gi|15815514|gb|BI787789.1|BI787789
genomic: AATGTTGCTCCCACAGAATCAAATTTGGATGAGACAAATAACTCTCTCATgtatgttctt ... tgttatttagGTATGCCTCACGAGTGAGATCCATTGTGAATGACCCCAACAAAAATGTTTC
EST: ATGTTGCTCCCACAGAATCAAATTTGGGATGGGACAAATAACTCTCTCAT GTATGCCTCACGAGTGAGATCCATTGTGAATGACCCCAACAAAAATGTTTCEST: gi|13311402|gb|BG405053.1|BG405053
genomic: ATGTTGCTCCCACAGAATCAAATTT-GGATGAGACAAATAACTCTCTCATgtatgttctt ... tgttatttagGTATGCCTCACGAGTGAGATCCATTGTGAATGACCCCAACAAAAATGTTTC
EST: AATGTTTCTCCCGCAGAATCAAATTTGGATGAGACAAATAACTCTCTCAT GTATGCCTCACGAGTGAGATCCATTGTGAATGACCCCAACAAAAATGTTTCEST: gi|193605741|gb|FK555571.1|FK555571
genomic: AATGTTGCTCCCACAGAATCAAATTTGGATGAGACAAATAACTCTCTCATgtatgttctt ... tgttatttagGTATGCCTCACGAGTGAGATCCATTGTGAATGACCCCAACAAAAATGTTTC
EST: AATGTTGCTCCCACAGAATCAAATTTGGATGAGACAAATAACTCTCTCAT GTATGCCTCACGAGTGAGATCCATTGTGAATGACCCCAACAAAAATGTTTCEST: gi|27424012|gb|CA935532.1|CA935532
genomic: AATGTTGCTCCCACAGAATCAAATTTGGATGAGACAAATAACTCTCTCATgtatgttctt ... tgttatttagGTATGCCTCACGAGTGAGATCCATTGTGAATGACCCCAACAAAAATGTTTC
EST: ATGTNTGCTCCCACAGAATCAAATTTGGATGAGACAAATAACTCTCTCAT GTATGCCTCACGAGTGAGATCCATTGTGAATGACCCCAACAAAAATGTTTCEST: gi|51336428|gb|CO980294.1|CO980294
genomic: ATGT-TGCTCCCACAGAATCAAATTTGGATGAGACAAATAACTCTCTCATgtatgttctt ... tgttatttagGTATGCCTCACGAGTGAGATCCATTGTGAATGACCCCAACAAAAATGTTTC
EST: AATGTTGCTCCCACAGAATCAAATTTGGATGAGACAAATAACTCTCTCAT GTATGCCTCACGAGTGAGATCCATTGTGAATGACCCCAACAAAAATGTTTC
genomic: AATGTTGCTCCCACAGAATCAAATTTGGATGAGACAAATAACTCTCTCATgtatgttctt ... tgttatttagGTATGCCTCACGAGTGAGATCCATTGTGAATGACCCCAACAAAAATGTTTC
caattgacttgaaagtgtctctcttgttctaacatcattcatctttgttatttagGTATGCCTCACGAGTGAGATCCATTGTGAATGACCCCAACAAAAATGTTTCCTCAAAAGAGGTAGCACGGCTGAAGAAGTTGGTTGCATATTGGAAACAA
ttctaac putative branch site (score: 1)
ttcatcttt putative PPT
atctttgttattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttctttcttattttctttcattattaatgttgagatttcacatcaactagcgatataaccaatgtgtctttgtagggattacattgaccttatcttttttatgtgagatctaaacaattgacttgaaagtgtctctcttgttctaacatcattcatctttgttatttagGTATGCCTCACGAGTGAGATCCATTGTGAATGACCCCAACAAAAATGTTTCCTCAAAAGAGGTAGCACGGCTGAAGAAGTTGGTTGCATATTGGAAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT