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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGAGAGACATAATGCAATTTGGAAGCAGCAATACTGCAGTCTTTTTTAAAATGCGAGTTGCAGGTGTTCTCCACATATTCCAGTTTGAAACCAAGCAGgtataatacctttgttgatgttgcacaaactttctttggaattattttgtcacactggtattttatctcttggttgtag

Basic information

species Glycine max
transcript GLYMA16G21340.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G21340.1 (Glycine max), 5'ss of exon 15
lower sequence: LOC_Os04g57140.1 (Oryza sativa), 5'ss of exon 10
GTTGAGAGACATAATGCAATTTGGAAGCAGCAATACTGCAGTCTTTTTTAAAATGCGAGTTGCAGGTGTTCTCCACATATTCCAGTTTGAAACCAAGCAGgtataatacctttgttgatgttgcacaaactttctttggaattattttgtcacactggtattttatctcttggttgtag
  ||||||| || ||||||||||| ||||||||||| || || || ||||||||| |||| || |||||||| || || || ||||||||||| ||||||||    |     | |  |    | |  || |     |     ||   ||| | |     || | || | | |       
ACTGAGAGATATCATGCAATTTGGGAGCAGCAATACCGCTGTTTTCTTTAAAATGAGAGTCGCTGGTGTTCTTCATATCTTTCAGTTTGAAACTAAGCAGgttagttttaaatctctaccaggaaataattcatactatgtgtaggctgtgaaataaccatctgatatttag-------

upper sequence: GLYMA16G21340.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G070273_T01 (Zea mays), 5'ss of exon 10
GTTGAGAGACATAATGCAATTTGGAAGCAGCAATACTGCAGTCTTTTTTAAAATGCGAGTTGCAGGTGTTCTCCACATATTCCAGTTTGAAACCAAGCAGgtataata--cctttgttgatgttgcacaaactttctttggaattattttgtcac-----actggtattttatctcttggttgtag-
  | |||||||| ||||||||||| |||||||||||||| ||||| ||||||||||| ||||| |||||||| || || || || |||||||| ||||||||||  ||   ||| |  |   | |   | | |      |    | || | |||       ||| ||   || |  |   || |   
ACTAAGAGACATCATGCAATTTGGTAGCAGCAATACTGCTGTCTTCTTTAAAATGCGGGTTGCTGGTGTTCTTCATATCTTTCAATTTGAAACAAAGCAGgtattctaaagcttcgaggcaatagtttataatacagccgatcctgttatatcatccatagctgttagaataacgatgactttttag

upper sequence: GLYMA16G21340.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G423861_T02 (Zea mays), 5'ss of exon 10
GTTGAGAGACATAATGCAATTTGGAAGCAGCAATACTGCAGTCTTTTTTAAAATGCGAGTTGCAGGTGTTCTCCACATATTCCAGTTTGAAACCAAGCAGgtataata--cctttgttgatgttgcacaaactttctttggaattattttgtcac-----actggtattttatctcttggttgtag
 || |||||||| ||||||||||| |||||||||||||| || || ||||||||||||||||| ||||| || || || || || |||||||| ||||||||||  ||    || |  |   | |  || | |   | ||    | || | |||      |||| ||   || |  |   || |||
ATTAAGAGACATCATGCAATTTGGTAGCAGCAATACTGCTGTTTTCTTTAAAATGCGAGTTGCTGGTGTCCTTCATATCTTTCAATTTGAAACAAAGCAGgtattctaaagtttcgaggcaatagttcataatgcatctgatcctgttatatcatctataactgatagaataaccatgttttttag

upper sequence: GLYMA16G21340.1 (Glycine max), 5'ss of exon 15
lower sequence: AT5G65930.1 (Arabidopsis thaliana), 5'ss of exon 9
GTTGAGAGACATAATGCAATTTGGAAGCAGCAATACTGCAGTCTTTTTTAAAATGCGAGTTGCAGGTGTTCTCCACATATTCCAGTTTGAAACCAAGCAGgtataa-tacctttgttgatgttgcacaaactttctttggaattattt-tgtcacactggtattttatctcttgg----ttgtag
  |  | ||||| ||||||||||| ||||| || ||||| |||||||| |||||| |||| || |||||||| |||||||| ||||| || || || ||||| |||  | |  | ||  ||   ||  |  ||     | ||||  || ||  | | |    ||   |  ||||     ||||||
ACTACGTGACATCATGCAATTTGGCAGCAGTAACACTGCTGTCTTTTTCAAAATGAGAGTCGCTGGTGTTCTTCACATATTTCAGTTCGAGACAAAACAGgtttaaacatcactatttgtggatcattatattatgaagcaattccttatgagatattcaatttgggtaacttgtatgtttgtag

upper sequence: GLYMA16G21340.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv04s0044g02020.t01 (Vitis vinifera), 5'ss of exon 11
GTTGAGAGACATAATGCAATTTGGAAGCAGCAATACTGCAGTCTTTTTTAAAATGCGAGTTGCAGGTGTTCTCCACATATTCCAGTTTGAAACCAAGCAGgtataataccttt---gttgatgt-----tgcacaaactttctttggaattattttgtcacactggtattttatctcttggttgtag-------------------------------------------------
  | ||||| |||||||||||||| |||||||||||||| || |||||||| ||| ||||||||||||| ||||||||||||||||||||||| || |||||     | ||||   |||  | |     |  | | |   | ||| || ||  || ||| |  |  | |||||| | ||  ||||                                                   
ACTAAGAGATATAATGCAATTTGGTAGCAGCAATACTGCTGTATTTTTTAAGATGAGAGTTGCAGGTGTCCTCCACATATTCCAGTTTGAAACTAAACAGgttcttaatcttttgagtttctatatgtatatatataacatttttagagtt--ttagtctcttttttcttttatgtattccttgtttgcctatcaaaaaattattatttgatagagttctattccattttatgcag

upper sequence: GLYMA16G21340.1 (Glycine max), 5'ss of exon 15
lower sequence: PP1S364_50V6.1 (Physcomitrella patens), 5'ss of exon 13
GTTGAGAGACATAATGCAATTTGGAAGCAGCAATACTGCAGTCTTTTTTAAAATGCGAGTTGCAGGTGTTCTCCACATATTCCAGTTTGAAACCAAGCAGgtataatacctttgttgatgttgcacaaactttctttggaattattttgtcacactggtattttatctcttggttgtag---------
  || | ||||| ||||||||||| |||||||| || || |||||||| |||||||| || || ||||| || || || || |||||||| || ||||||||    | | |   | ||| ||||       | |||   |||   | | | |   |||   ||||| | | | ||||           
ACTGCGCGACATTATGCAATTTGGTAGCAGCAACACAGCCGTCTTTTTCAAAATGCGTGTAGCGGGTGTACTGCATATTTTTCAGTTTGAGACTAAGCAGgttattttcgtacctagatcttgctttg---tacttgcaaatccctatattattttggagatttatttttggtttgtcttgtgagcag

upper sequence: GLYMA16G21340.1 (Glycine max), 5'ss of exon 15
lower sequence: EFJ30174 (Selaginella moellendorffii), 5'ss of exon 11
GTTGAGAGACATAATGCAATTTGGAAGCAGCAATACTGCAGTCTTTTTTAAAATGCGAGTTGCAGGTGTTCTCCACATATTCCAGTTTGAAACCAAGCAGgtataatacctttgttgatgttgcacaaactttctttggaattattttgtcacactggtattttatctcttggttgtag
| |||||||||| |||||||||||||| |||||||| ||||| |||||||||||||| || || || ||| | ||||| || ||||||||||| || ||||| |     |||||| |   || |    | ||  | |  || | || |||| ||                         
GCTGAGAGACATCATGCAATTTGGAAGTAGCAATACCGCAGTGTTTTTTAAAATGCGTGTGGCGGGAGTTTTGCACATTTTTCAGTTTGAAACTAAACAGgtgt-----ctttgt-ggctttccgtgtagttcttctctaaat-ttctgtcgcag------------------------

upper sequence: GLYMA16G21340.1 (Glycine max), 5'ss of exon 15
lower sequence: EFJ06058 (Selaginella moellendorffii), 5'ss of exon 11
GTTGAGAGACATAATGCAATTTGGAAGCAGCAATACTGCAGTCTTTTTTAAAATGCGAGTTGCAGGTGTTCTCCACATATTCCAGTTTGAAACCAAGCAGgtataatacctttgttgatgttgcacaaactttctttggaattattttgtcacactggtattttatctcttggttgtag
| | |||||||| |||||||||||||| |||||||| ||||| |||||||||||||| || || || ||| | ||||| || ||||||||||| || ||||| |      |||  ||   || |    | ||  | |  || | || |||| ||                         
GCTTAGAGACATCATGCAATTTGGAAGTAGCAATACCGCAGTGTTTTTTAAAATGCGTGTGGCGGGAGTTTTGCACATTTTTCAGTTTGAAACTAAACAGgtgt------ttttgtggctttccgtgtagttcttctctaaat-ttctgtcgcag------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208309605|gb|GE108059.1|GE108059
EST:     AAATGCGAGTTGCAGGTGTTCTCCACATATTCCAGTTTGAAACCAAGCAG                         GGAGAAGAAATTTGTGTAGCTCTTCAGACACACATAAATGATGTAATGCTG
genomic: AAATGCGAGTTGCAGGTGTTCTCCACATATTCCAGTTTGAAACCAAGCAGgtataatacc ... ttggttgtagGGAGAAGAAATTTGTGTAGCTCTTCAGACACACATAAATGATGTAATGCTG
EST: gi|208212811|gb|GE010470.1|GE010470
EST:     AAATGCGAGTTGCAGGTGTTCTCCACATATTCCAGTTTGAAACCAAGCAG                         GGAGAAGAAATTTGTGTAGCTCTTCAGACACACATAAATGATGTAATGCTG
genomic: AAATGCGAGTTGCAGGTGTTCTCCACATATTCCAGTTTGAAACCAAGCAGgtataatacc ... ttggttgtagGGAGAAGAAATTTGTGTAGCTCTTCAGACACACATAAATGATGTAATGCTG
EST: gi|208068710|gb|GD865776.1|GD865776
EST:     AAATGCGAGTTGCAGGTGTTCTCCACATATTCCAGTTTGAAACCAAGCAG                         GGAGAAGAAATTTGTGTAGCTCTTCAGACACACATAAATGATGTAATGCTA
genomic: AAATGCGAGTTGCAGGTGTTCTCCACATATTCCAGTTTGAAACCAAGCAGgtataatacc ... ttggttgtagGGAGAAGAAATTTGTGTAGCTCTTCAGACACACATAAATGATGTAATGCT-