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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTCAATCTGCTGGGAAACATGGATTTTTTTCTAAAAGATCTGTAGGTCCCCAAGTTCGAGAAAAAGTTACATTTGAGGACATGTTGAGTTTTCAAAAGgtaatcagatcaaataccagttattttcaaaatatgtggtatgaagagctaactcaccaatttttgtag

Basic information

species Glycine max
transcript GLYMA16G21340.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G21340.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv04s0044g02020.t01 (Vitis vinifera), 5'ss of exon 3
AATTCAATCTGCTGGGAAACATGGATTTTTTTCTAAAAGATCTGTAGGTCCCCAAGTTCGAGAAAAAGTTACATTTGAGGACATGTTGAGTTTTCAAAAGgtaatcagat-------caaataccagttattttcaa--aatatgtggtatgaagagctaactcaccaatttttg-tag
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GATTCAATCTTCTGGAAAACGTGGTTTTTTTTCTAAAAGATCGGTAGGGCCTCAAGTTCGAGACAAATTCACATTTGAGGATATGATGTGTTTCCAAAGGgtaataatatgctacttttcatgacatttttttattattagcacccagcagaaagagctaactaacatctttttgacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208249980|gb|GE049971.1|GE049971
EST:     AAAAGTTACATTTGAGGACATGTTGAGTTTTCAAAAG                         GATCCAATTCCAACATCATTGCTCAAGTTAAATGTTGATTTTGTAAGTAGG
genomic: AAAAGTTACATTTGAGGACATGTTGAGTTTTCAAAAGgtaatcagat ... atttttgtagGATCCAATTCCAACATCATTGCTCAAGTTAAATGTTGATTTTGTAAGTAGG