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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTGTACAGAGAATAGTCCGTGCCTCTGATCCTCTACAGTCAATGCATGATATCAATCAAAATTTCCCTAACATAGTTTCTTCTTTGTCTCGCATGAAGgtaaataactttgttactttcattggatgctaacataagacagtttactcccaagtaattgtttgttgttctaatggaactgcgacgtgctgtgcaacag

Basic information

species Glycine max
transcript GLYMA08G20020.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G20020.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G370162_T02 (Zea mays), 5'ss of exon 7
AACTGTACAGAGAATAGTCCGTGCCTCTGATCCTCTACAGTCAATGCATGATATCAATCAAAATTTCCCTAACATAGTTTCTTCTTTGTCTCGCATGAAGgtaa----ataactttgttactttcattggatgctaacataagac-agtttactcccaagtaattgtttgttgttctaatggaactgcgacgtgctgtg-caacag-------------
 || | |||| |||| || |  || || || ||| ||||||||||||| || ||||||||||||||||| |  |||||||||||  | || || ||||||||||    | | |||| | ||||| |  |  |||     |    | | |||| | ||||   |||  |||   || | | |    | || | || |    ||| |              
GACAGCACAGCGAATCGTTCAAGCATCAGACCCTTTACAGTCAATGCAGGAAATCAATCAAAATTTCCCAAGTATAGTTTCTTCACTATCACGAATGAAGgtaatgttacatctttctcactttaaa-gcttgcctttgtttctctactttatttccaatacattaattgaaattatgaagtggattcggc-tgttacaacaatatcatgcttgtacag

upper sequence: GLYMA08G20020.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G71220.1 (Arabidopsis thaliana), 5'ss of exon 7
AACTGTACAGAGAATAGTCCGTGCCTCTGATCCTCTACAGTCAATGCATGATATCAATCAAAATTTCCCTAACATAGTTTCTTCTTTGTCTCGCATGAAGgtaaataactttgttactttcattggatgctaacataagacagtttactcccaagtaattgtttgttgttctaatggaactgcgacgtgctgtgcaacag
||| |  ||||||||||||| ||||||||||||||| ||||| ||||| || || |||||||| || ||||   |||||||||| || |||||||||||||||  |  | |||||  ||| ||    || | || |  |   ||| | |      |  ||  |||| ||| ||   |      |   |   |||||    
AACAGCGCAGAGAATAGTCCATGCCTCTGATCCTCTGCAGTCTATGCAAGAAATTAATCAAAACTTTCCTAGTGTAGTTTCTTCATTATCTCGCATGAAGgtatgt--cattgtttttttgatgttgtgtttacct--gctggttgaat------tgtttccttgtggttttagatgtgtc-tggtttatcgtgcag---

upper sequence: GLYMA08G20020.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv12s0034g02230.t01 (Vitis vinifera), 5'ss of exon 8
AACTGTACAGAGAATAGTCCGTGCCTCTGATCCTCTACAGTCAATGCATGATATCAATCAAAATTTCCCTAACATAGTTTCTTCTTTGTCTCGCATGAAGgtaaataactttgttactttcat-tggatgctaa----cataagacagtttactcccaagta---attgtttgttgt-------tctaatggaactgcgacgtgctgtgcaacag-----------------------
||||| |||||| ||||| | ||||||||||||||| ||||||||||| || ||||| |||||||||||||   |||||||||| || |||||||||||||||||| |   |  ||   |  |   | | ||||      ||| |  || |      ||  |   |  |||||||         |||||||    |  ||| | |||   ||  |                       
AACTGCACAGAGGATAGTTCATGCCTCTGATCCTCTGCAGTCAATGCAAGAGATCAACCAAAATTTCCCTAGTGTAGTTTCTTCCTTATCTCGCATGAAGgtaaatcatcctactaagatgttgcaggtcctaaatgatctaaaaaggtgtctgttgaaacatggaaagtttgttccaaggatatctaatgctttta-gacatcctgattaaatggtatggtgctgaacattttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207766421|gb|GD736509.1|GD736509
EST:     ATATCAATCAAAATTTCCCTAACATAGTTTCTTCTTTGTCTCGCATGAAG                         CTTGATGATTCTGTTCAAGATGAAATAATGGCAAACCAGCGGATGATCCCA
genomic: ATATCAATCAAAATTTCCCTAACATAGTTTCTTCTTTGTCTCGCATGAAGgtaaataact ... tgtgcaacagCTTGATGATTCTGTTCAAGATGAAATAATGGCAAACCAGCGGATGATCCCA