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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaattgcatttttatttaaataaataggctggtgattccttttgataccatcataaagcattaattgttaaataatacattctaagaatccattgttgttcttttcaattgttcatgtattagGTCATTGCTCTGAGAAAGATCATGATCCTCCTCGAGGTCTTCAGTTGATTCTTGGAACCAAAACTACACCCCATTTAGTTGATACCATTGTGATGGCTAA

Basic information

species Glycine max
transcript GLYMA08G20020.1
intron # 27
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G20020.1 (Glycine max), 3'ss of exon 27
lower sequence: AT1G71220.2 (Arabidopsis thaliana), 3'ss of exon 27
gtaaaattgcatttttatttaaataaataggctggtgattccttttgataccatcataaagcattaattgttaaataatacattctaagaatccattgttgttcttttcaa--ttgttcatgtattagGTCATTGCTCTGAGAAAGATCATGATCCTCCTCGAGGTCTTCAGTTGATTCTTGGAACCAAAACTACACCCCATTTAGTTGATACCATTGTGATGGCTAA
                                              | || | |    || |  | ||| || ||   |  ||     | ||   ||  |||| || | ||  |    | || |  |||||||||| | || |||||||||||  ||||||| || |||||| ||||||| |||||||||| || ||| ||||| ||||||||| |||| ||||| ||
----------------------------------------------gttagcttttctaaac--ttattcttcaagggtggat-----ggatttgttcatgttattattaacataacccttgcac-agGTCATTGCGCGGAAAAAGATCATGAGGCTCCTCGTGGCCTTCAGCTGATTCTGGGAACCAAAAATAGACCGCATTTGGTTGATACCCTTGTAATGGCCAA

upper sequence: GLYMA08G20020.1 (Glycine max), 3'ss of exon 27
lower sequence: Vv12s0034g02230.t01 (Vitis vinifera), 3'ss of exon 28
gtaaaattgcatttttatttaaataaataggctggtgattccttttgataccatcataaagcattaattgttaaataatacattctaagaatccattgttgttcttttcaattgttcatgtattagGTCATTGCTCTGAGAAAGATCATGATCCTCCTCGAGGTCTTCAGTTGATTCTTGGAACCAAAACTACACCCCATTTAGTTGATACCATTGTGATGGCTAA
                   |||||   |     ||||   | ||||||||   |        || | |  ||                      |||||| ||    | || | | |||  || ||||||||| || || |||||||||||||||||| |||| |||||||| |||||||| || |||| |||||| || || ||||||||| |||||||||| ||
------------------gtaaatttgtgtttaggtg---cattttgatatttttgcgtgttatcagtgattg-------------------ttattgttcttacaattaactat-cattgatcagGTCATTGTTCAGAAAAAGATCATGATCCTCCTAGAGGCCTTCAGTTAATTCTTGGGACTAAAAGTACACCTCACTTGGTTGATACCCTTGTGATGGCCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7692843|gb|AW760942.1|AW760942
EST:     TACAAGAACATTGCAAGCAATTTTTGAACTTGAAGCTCTTGTCCTAACAG                         GTCATTGCTCTGAGAAAGATCATGATCCTCCTCGAGGTCTTCAGTTGATTC
genomic: TACAAGAACATTGCAAGCAATTTTTGAACTTGAAGCTCTTGTCCTAACAGgtaaaattgc ... catgtattagGTCATTGCTCTGAGAAAGATCATGATCCTCCTCGAGGTCTTCAGTTGATTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaataatacattctaagaatccattgttgttcttttcaattgttcatgtattagGTCATTGCTCTGAGAAAGATCATGATCCTCCTCGAGGTCTTCAGTTGATTCTTGGAACCAAAACTACACCCCATTTAGTTGATACCATTGTGATGGCTAA
                                 ttttcaatt  TA-rich tract