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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaaaagtctctttgttcttgtaaactcatcatattatcgctgacatgtttgcagctccttcacttcacacatatttttaacttgcctccactttgatctttagGGTGCAAGACGAATAGTATCAGAGTGGCCAGACCTTGATTTGGAGGCAAGTAAATTCACTGCACGGATCTTAGGTGATGATCTAGAACCTTTGCAATCCC

Basic information

species Glycine max
transcript GLYMA08G20020.1
intron # 36
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15204868|gb|BI427636.1|BI427636
EST:     AAACAATTGATCTGTGCAACAATCCCATGACAAAAGAACCCAAACTTCAG                         GGTGCAAGACGAATAGTATCAGAGTGGCCAGACCTTGATTTGGAGGCAAGT
genomic: AAACAATTGATCTGTGCAACAATCCCATGACAAAAGAACCCAAACTTCAGgtgaaaagtc ... tgatctttagGGTGCAAGACGAATAGTATCAGAGTGGCCAGACCTTGATTTGGAGGCAAGT
EST: gi|112361150|gb|EE400121.1|EE400121
EST:     AAACAATTGATCTGTGCAACAATCCCATGACAAAAGAACCCAAACTTCAG                         GGTGCAAGACGAATAGTATCAGAGTGGCCAGACCTTGATTTGGAGGCAAGT
genomic: AAACAATTGATCTGTGCAACAATCCCATGACAAAAGAACCCAAACTTCAGgtgaaaagtc ... tgatctttagGGTGCAAGACGAATAGTATCAGAGTGGCCAGACCTTGATTTGGAGGCAAGT
EST: gi|22523540|gb|BU082360.1|BU082360
EST:     AAACAATTGATCTGTGCAACAATCCCATGACAAAAGAACCCAAACTTCAG                         GGTGCAAGACGAATAGTATCAGAGTGGCCAGACCTTGATTTGGAG
genomic: AAACAATTGATCTGTGCAACAATCCCATGACAAAAGAACCCAAACTTCAGgtgaaaagtc ... tgatctttagGGTGCAAGACGAATAGTATCAGAGTGGCCAGACCTTGATTTGGAG
EST: gi|20812577|gb|BQ297055.1|BQ297055
EST:     AAACAATTGATCTGTGCAACAATCCCATGACAAAAGAACCCAAACTTCAG                         GGTGCAAGACGAATAGTATCAGAGTGGCCAGACCTTGATTTGGAGGCAAGT
genomic: AAACAATTGATCTGTGCAACAATCCCATGACAAAAGAACCCAAACTTCAGgtgaaaagtc ... tgatctttagGGTGCAAGACGAATAGTATCAGAGTGGCCAGACCTTGATTTGGAGGCAAGT
EST: gi|12690009|gb|BG156345.1|BG156345
EST:     AAACAATTGATCTGTGCAACAATCCCATGACAAAAGAACCCAAACTTCAG                         GGTGCAAGACGAATAGTATCAGAGTGGCCAGACCTTGATTTGGAGGCAAGT
genomic: AAACAATTGATCTGTGCAACAATCCCATGACAAAAGAACCCAAACTTCAGgtgaaaagtc ... tgatctttagGGTGCAAGACGAATAGTATCAGAGTGGCCAGACCTTGATTTGGAGGCAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcagctccttcacttcacacatatttttaacttgcctccactttgatctttagGGTGCAAGACGAATAGTATCAGAGTGGCCAGACCTTGATTTGGAGGCAAGTAAATTCACTGCACGGATCTTAGGTGATGATCTAGAACCTTTGCAATCCC
                                cttgcctccacttt  CT-rich tract
                    acatatttttaactt  TA-rich tract