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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggcttattctgctatatttctttcatataatgccttattgcgaataaattagttttggaaatttacattgaaatttatttcgatttttggagcagCAAAAGCAGTATTATCAGCATTTGTCAGAGGGCTTTAAAGCAGCATGAGCAGCATGACATTCACTTTGTTATTTTAGCAGGTGTCGACATTCCTTTAAAG

Basic information

species Glycine max
transcript GLYMA08G19920.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21889596|gb|BQ742809.1|BQ742809
EST:     ACCATTTTGAGGTAGCACTGAGTAAAGTGTCTCCGTCTGTGTCAGACAGG                         CAAAAGCAGTATTATCAGCATTTGTCAGAGGGCTTTAAAGCAGCATGAGCA
genomic: ACCATTTTGAGGTAGCACTGAGTAAAGTGTCTCCGTCTGTGTCAGACAGGgtatggctta ... tttggagcagCAAAAGCAGTATTATCAGCATTTGTCAGAGGGCTTTAAAGCAGCATGAGCA
EST: gi|298192475|gb|HO036557.1|HO036557
EST:     ACCATTTTGAGGTAGCACTGAGTAAAGTGTCTCCGTCTGTGCCAGACAGG                         CAAAAGCAGTATTATCAG
genomic: ACCATTTTGAGGTAGCACTGAGTAAAGTGTCTCCGTCTGTGTCAGACAGGgtatggctta ... tttggagcagCAAAAGCAGTATTATCAG
EST: gi|23730467|gb|BU763322.1|BU763322
EST:     ACCATTTTGAGGTAGCACTGAGTAAAGTGTCTCCGTCTGTGTCAGACAGG                         CAAAAGCAGTATTATCAGCATTTGTCAGAGGGCTTTAAAGCAGCATGAGCA
genomic: ACCATTTTGAGGTAGCACTGAGTAAAGTGTCTCCGTCTGTGTCAGACAGGgtatggctta ... tttggagcagCAAAAGCAGTATTATCAGCATTTGTCAGAGGGCTTTAAAGCAGCATGAGCA
EST: gi|8669605|gb|BE190712.1|BE190712
EST:     ACCATTTTGAGGTAGCACTGAGTAAAGTGTCTCCGTCTGTGTCAGACAGG                         CAAAAGCAGTATTATCAGCATTTGTCAGAGGGCTTTAAAGCAGCATGAGCA
genomic: ACCATTTTGAGGTAGCACTGAGTAAAGTGTCTCCGTCTGTGTCAGACAGGgtatggctta ... tttggagcagCAAAAGCAGTATTATCAGCATTTGTCAGAGGGCTTTAAAGCAGCATGAGCA
EST: gi|208168111|gb|GD970817.1|GD970817
EST:     ACCATTTTGAGGTAGCACTGAGTAAAGTGTCTCCGTCTGTGTCAGACAGG                         CAAAAGCAGTATTATCAGCATTTGTCAGAGGGCTTTAAAGCAGCATGAGCA
genomic: ACCATTTTGAGGTAGCACTGAGTAAAGTGTCTCCGTCTGTGTCAGACAGGgtatggctta ... tttggagcagCAAAAGCAGTATTATCAGCATTTGTCAGAGGGCTTTAAAGCAGCATGAGCA
EST: gi|207716776|gb|GD699790.1|GD699790
EST:     GTCTGTGTCAGACAGG                         CAAAAGCAGTATTATCAGCATTTGTCAGAGGGCTTTAAAGCAGCATGAGCA
genomic: GTCTGTGTCAGACAGGgtatggctta ... tttggagcagCAAAAGCAGTATTATCAGCATTTGTCAGAGGGCTTTAAAGCAGCATGAGCA
EST: gi|22926991|gb|BU544130.1|BU544130
EST:     ACCATTTTGAGGTAGCACTGAGTAAAGTGTCTCCGTCTGTGTCAGACAGG                         CAAAAGCAGTATTATCAGCATTTGTCAGAGGGCTTTAAAGCAGCATGAGCA
genomic: ACCATTTTGAGGTAGCACTGAGTAAAGTGTCTCCGTCTGTGTCAGACAGGgtatggctta ... tttggagcagCAAAAGCAGTATTATCAGCATTTGTCAGAGGGCTTTAAAGCAGCATGAGCA
EST: gi|193306536|gb|FK272826.1|FK272826
EST:     ACCATTTTGAGGTAGCACTGAGTAAAGTGTCTCCGTCTGTGTCAGACAGG                         CAAAAGCAGTATTATCAGCATTTGTCAGAGGGCTTTAAAGCAGCATGAGCA
genomic: ACCATTTTGAGGTAGCACTGAGTAAAGTGTCTCCGTCTGTGTCAGACAGGgtatggctta ... tttggagcagCAAAAGCAGTATTATCAGCATTTGTCAGAGGGCTTTAAAGCAGCATGAGCA
EST: gi|193538485|gb|FK498939.1|FK498939
EST:     CGTCTGTGTCTAGACAGG                         CAAAAGCAGTATTATCAGCATTTGTCAGAGGGCTTTAAAGCAGCATGAGC
genomic: CGTCTGTGTC-AGACAGGgtatggctta ... tttggagcagCAAAAGCAGTATTATCAGCATTTGTCAGAGGGCTTTAAAGCAGCATGAGC
EST: gi|193541375|gb|FK499127.1|FK499127
EST:     TGTCTCCGTCTGTGTCAGACAGG                         A
genomic: TGTCTCCGTCTGTGTCAGACAGGgtatggctta ... tttggagcag-
EST: gi|193541375|gb|FK499127.1|FK499127
EST:     TGTCTCCGTCTGTGTCAGACAGG                         A
genomic: TGTCTCCGTCTGTGTCAGACAGGgtatggctta ... tttggagcag-
EST: gi|208335555|gb|GE137560.1|GE137560
EST:     ACCATTTTGAGGTAGCACTGAGTAAAGTGTCTCCGTCTGTGTCAGACAGG                         CAAAAGCAGTATTATCAGCATTTGTCAGAGGGCTTTAAAGCAGCATGAGCA
genomic: ACCATTTTGAGGTAGCACTGAGTAAAGTGTCTCCGTCTGTGTCAGACAGGgtatggctta ... tttggagcagCAAAAGCAGTATTATCAGCATTTGTCAGAGGGCTTTAAAGCAGCATGAGCA
EST: gi|23730684|gb|BU763437.1|BU763437
EST:     ACCATTTTGAGGTAGCACTGAGTAAAGTGTCTCCGTCTGTGTCAGACAGG                         CAAAAGCAGTATTATCAGCATTTGTCAGAGGGCTTTAAAGCAGCATGAGCA
genomic: ACCATTTTGAGGTAGCACTGAGTAAAGTGTCTCCGTCTGTGTCAGACAGGgtatggctta ... tttggagcagCAAAAGCAGTATTATCAGCATTTGTCAGAGGGCTTTAAAGCAGCATGAGCA
EST: gi|57574066|gb|CX547041.1|CX547041
EST:     ACCATTTTGAGGTAGCACTGAGTAAAGTGTCTCCGTCTGTGTCAGACAGG                         CAAAAGCAGTATTATCAGCATTTGTCAGAGGGCTTTAAAGCAGCATGAGCA
genomic: ACCATTTTGAGGTAGCACTGAGTAAAGTGTCTCCGTCTGTGTCAGACAGGgtatggctta ... tttggagcagCAAAAGCAGTATTATCAGCATTTGTCAGAGGGCTTTAAAGCAGCATGAGCA
EST: gi|208106824|gb|GD902357.1|GD902357
EST:     ACCATTTTGAGGTAGCACTGAGTAAAGTGTCTCCGTCTGTGTCAGACAGG                         CAAAAGCAGTATTATCAGCATTTGTCAGAGGGCTTTAAAGCAGCATGAGCA
genomic: ACCATTTTGAGGTAGCACTGAGTAAAGTGTCTCCGTCTGTGTCAGACAGGgtatggctta ... tttggagcagCAAAAGCAGTATTATCAGCATTTGTCAGAGGGCTTTAAAGCAGCATGAGCA
EST: gi|193673435|gb|FK614776.1|FK614776
EST:     ACCATTTTGAGGTAGCACTGAGTAAAGTGTCTCCGTCTGTGTCAGACAGG                         CAAAAGCAGTATTATC
genomic: ACCATTTTGAGGTAGCACTGAGTAAAGTGTCTCCGTCTGTGTCAGACAGGgtatggctta ... tttggagcagCAAAAGCAGTATTATC
EST: gi|209722218|gb|BW659356.1|BW659356
EST:     ACCATTTTGAGGTAGCACTGAGTAAAGTGTCTCCGTCTGTGTCAGACAGG                         CAAAAGCAGTATTATCAGCATTTGTCAGAGGGCTTTAAAGCAGCATGAGCA
genomic: ACCATTTTGAGGTAGCACTGAGTAAAGTGTCTCCGTCTGTGTCAGACAGGgtatggctta ... tttggagcagCAAAAGCAGTATTATCAGCATTTGTCAGAGGGCTTTAAAGCAGCATGAGCA
EST: gi|298186613|gb|HO037246.1|HO037246
EST:     ACCATTTTGAGGTAGCACTGAGTAAAGTGTCTCCGTCTGTGCCAGACAGG                         CAAAAGCAGTATTATCAGCATTTGTCAGAGGGCTTTAAAGCAGCATGAGCA
genomic: ACCATTTTGAGGTAGCACTGAGTAAAGTGTCTCCGTCTGTGTCAGACAGGgtatggctta ... tttggagcagCAAAAGCAGTATTATCAGCATTTGTCAGAGGGCTTTAAAGCAGCATGAGCA
EST: gi|23733373|gb|BU764883.1|BU764883
EST:     TCCTTTTTGAGGTAGCACTGAGTAAAGTGTCTCCGTCTGTGTCAGACAGG                         CAAAAGCAGTATTATCAGCATTTGTCAGAGGGCTTTAAAGCAGCATGAGCA
genomic: ACCATTTTGAGGTAGCACTGAGTAAAGTGTCTCCGTCTGTGTCAGACAGGgtatggctta ... tttggagcagCAAAAGCAGTATTATCAGCATTTGTCAGAGGGCTTTAAAGCAGCATGAGCA
EST: gi|193335709|gb|FK301893.1|FK301893
EST:     ACCATTTTGAGGTAGCACTGAGTAAAGTGTCTCCGTCTGTGTCAGACAGG                         CAAAAGCAGTATTATCAGCATTTGTCAGAGGGCTTTAAAGCAGCATGAGCA
genomic: ACCATTTTGAGGTAGCACTGAGTAAAGTGTCTCCGTCTGTGTCAGACAGGgtatggctta ... tttggagcagCAAAAGCAGTATTATCAGCATTTGTCAGAGGGCTTTAAAGCAGCATGAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgaataaattagttttggaaatttacattgaaatttatttcgatttttggagcagCAAAAGCAGTATTATCAGCATTTGTCAGAGGGCTTTAAAGCAGCATGAGCAGCATGACATTCACTTTGTTATTTTAGCAGGTGTCGACATTCCTTTAAAG
                                           ttttt  CT-rich tract
     aaattagttttggaaa  TA-rich tract