1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atgcttgtttgattattagcgggtacaaactacaaatgttggactacagaaaaagtgggtagtcagtttgagagagatactgattttattgactttacagATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAGACAACTTGTGATACATTGACCATCAAGAGGACCATCAAGAGGCACCATT
species | Glycine max |
transcript | GLYMA08G19920.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTG ATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAGEST: gi|21889596|gb|BQ742809.1|BQ742809
genomic: CAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTGgtttgtgtct ... gactttacagATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAG
EST: CAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTG ATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAGEST: gi|298192475|gb|HO036557.1|HO036557
genomic: CAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTGgtttgtgtct ... gactttacagATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAG
EST: CAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTG ATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAGEST: gi|23730467|gb|BU763322.1|BU763322
genomic: CAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTGgtttgtgtct ... gactttacagATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAG
EST: CAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTG ATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAGEST: gi|208170653|gb|GD967480.1|GD967480
genomic: CAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTGgtttgtgtct ... gactttacagATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAG
EST: CAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTG ATGAATGAAGCAGCAATGGCTGCTCTTEST: gi|193515197|gb|FK473753.1|FK473753
genomic: CAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTGgtttgtgtct ... gactttacagATGAATGAAGCAGCAATGGCTGCTCTT
EST: CAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTG ATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAGEST: gi|193398522|gb|FK363002.1|FK363002
genomic: CAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTGgtttgtgtct ... gactttacagATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAG
EST: CAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTG ATGAATGAAGCAGEST: gi|8669605|gb|BE190712.1|BE190712
genomic: CAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTGgtttgtgtct ... gactttacagATGAATGAAGCAG
EST: CAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTG ATGAATGAAGCAGCGATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAGEST: gi|193345514|gb|FK313681.1|FK313681
genomic: CAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTGgtttgtgtct ... gactttacagATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAG
EST: CAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTG ATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGAEST: gi|22926991|gb|BU544130.1|BU544130
genomic: CAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTGgtttgtgtct ... gactttacagATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGA
EST: CAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTG ATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAGEST: gi|193556716|gb|FK511925.1|FK511925
genomic: CAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTGgtttgtgtct ... gactttacagATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAG
EST: CAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTG ATGAATGAAGCAGCAATGGCTGCTCCTGAAGAGAGATTGACCTCTATTGAGEST: gi|207807775|gb|GD778124.1|GD778124
genomic: CAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTGgtttgtgtct ... gactttacagATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAG
EST: CAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTG ATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAGEST: gi|208167263|gb|GD963053.1|GD963053
genomic: CAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTGgtttgtgtct ... gactttacagATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAG
EST: CAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTG ATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAGEST: gi|207783843|gb|GD756823.1|GD756823
genomic: CAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTGgtttgtgtct ... gactttacagATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAG
EST: AAAAATGGAAGCTTGTGAAAACCTAAAGTGGCGCAGATCTTGCTGCATTG ATGAATGAAGCAGCGATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAGEST: gi|193709507|gb|FK642513.1|FK642513
genomic: AAAAATGGAAGCTTGTGAAAACCTAA-GTGGCGCAGATCTTGCTGCATTGgtttgtgtct ... gactttacagATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAG
EST: CAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTG ATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAGEST: gi|193428259|gb|FK397225.1|FK397225
genomic: CAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTGgtttgtgtct ... gactttacagATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAG
EST: CAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTG ATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAGEST: gi|207778366|gb|GD750105.1|GD750105
genomic: CAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTGgtttgtgtct ... gactttacagATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAG
EST: AAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTG ATTAANGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAGEST: gi|208070437|gb|GD872542.1|GD872542
genomic: AAAAA-TGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTGgtttgtgtct ... gactttacagATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAG
EST: CAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTG ATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAGEST: gi|208078527|gb|GD874463.1|GD874463
genomic: CAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTGgtttgtgtct ... gactttacagATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAG
EST: AAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTG ATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAGEST: gi|23730684|gb|BU763437.1|BU763437
genomic: AAAAA-TGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTGgtttgtgtct ... gactttacagATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAG
EST: CAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTG ATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAGEST: gi|208057618|gb|GD851713.1|GD851713
genomic: CAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTGgtttgtgtct ... gactttacagATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAG
EST: CAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTG ATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAGEST: gi|57574066|gb|CX547041.1|CX547041
genomic: CAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTGgtttgtgtct ... gactttacagATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAG
EST: CAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTG ATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAGEST: gi|193673435|gb|FK614776.1|FK614776
genomic: CAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTGgtttgtgtct ... gactttacagATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAG
EST: CAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTG ATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAGEST: gi|209722218|gb|BW659356.1|BW659356
genomic: CAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTGgtttgtgtct ... gactttacagATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAG
EST: CAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTG ATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAGEST: gi|298186613|gb|HO037246.1|HO037246
genomic: CAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTGgtttgtgtct ... gactttacagATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAG
EST: CAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTG ATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAGEST: gi|23733373|gb|BU764883.1|BU764883
genomic: CAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTGgtttgtgtct ... gactttacagATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAG
EST: CAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTG ATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAG
genomic: CAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCAGATCTTGCTGCATTGgtttgtgtct ... gactttacagATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAG
acagaaaaagtgggtagtcagtttgagagagatactgattttattgactttacagATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAGACAACTTGTGATACATTGACCATCAAGAGGACCATCAAGAGGCACCATT
tattgac putative branch site (score: 2)
attttattgacttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgcttgtttgattattagcgggtacaaactacaaatgttggactacagaaaaagtgggtagtcagtttgagagagatactgattttattgactttacagATGAATGAAGCAGCAATGGCTGCTCTTGAAGAGAGATTGACCTCTATTGAGACAACTTGTGATACATTGACCATCAAGAGGACCATCAAGAGGCACCATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
-tgcttgt
- - - - - - - - - - - - - - - - - -atgttgg
- - - - - - - - - - - - - - - - - - - - - - - -agaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - gtgggta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatactg